Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00327 and H281DRAFT_00328 are separated by 87 nucleotides H281DRAFT_00328 and H281DRAFT_00329 are separated by 436 nucleotides
H281DRAFT_00327: H281DRAFT_00327 - amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-), at 357,497 to 358,747
_00327
H281DRAFT_00328: H281DRAFT_00328 - alcohol dehydrogenase (cytochrome c), at 358,835 to 360,562
_00328
H281DRAFT_00329: H281DRAFT_00329 - DNA binding domain-containing protein, excisionase family, at 360,999 to 362,129
_00329
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 358.335 kb on + strand, within H281DRAFT_00327 at 358.336 kb on - strand at 358.402 kb on - strand, within H281DRAFT_00327 at 358.860 kb on + strand at 358.956 kb on + strand at 359.143 kb on - strand, within H281DRAFT_00328 at 359.259 kb on + strand, within H281DRAFT_00328 at 359.260 kb on - strand, within H281DRAFT_00328 at 359.311 kb on + strand, within H281DRAFT_00328 at 359.312 kb on - strand, within H281DRAFT_00328 at 359.312 kb on - strand, within H281DRAFT_00328 at 359.334 kb on + strand, within H281DRAFT_00328 at 359.335 kb on - strand, within H281DRAFT_00328 at 359.445 kb on + strand, within H281DRAFT_00328 at 359.485 kb on - strand at 359.523 kb on + strand, within H281DRAFT_00328 at 359.557 kb on - strand, within H281DRAFT_00328 at 359.571 kb on + strand, within H281DRAFT_00328 at 359.610 kb on + strand, within H281DRAFT_00328 at 359.611 kb on - strand, within H281DRAFT_00328 at 359.641 kb on - strand, within H281DRAFT_00328 at 359.779 kb on - strand, within H281DRAFT_00328 at 360.093 kb on + strand, within H281DRAFT_00328 at 360.093 kb on + strand at 360.094 kb on - strand, within H281DRAFT_00328 at 360.094 kb on - strand, within H281DRAFT_00328 at 360.108 kb on + strand, within H281DRAFT_00328 at 360.108 kb on + strand, within H281DRAFT_00328 at 360.220 kb on - strand, within H281DRAFT_00328 at 360.220 kb on - strand, within H281DRAFT_00328 at 360.387 kb on + strand at 360.388 kb on - strand, within H281DRAFT_00328 at 360.399 kb on + strand at 360.400 kb on - strand at 360.445 kb on - strand at 360.692 kb on - strand at 361.214 kb on - strand, within H281DRAFT_00329
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 358,335 + H281DRAFT_00327 0.67 +1.1 358,336 - -0.9 358,402 - H281DRAFT_00327 0.72 +0.4 358,860 + +0.4 358,956 + -4.0 359,143 - H281DRAFT_00328 0.18 -0.4 359,259 + H281DRAFT_00328 0.25 +0.2 359,260 - H281DRAFT_00328 0.25 +2.9 359,311 + H281DRAFT_00328 0.28 -0.1 359,312 - H281DRAFT_00328 0.28 -0.4 359,312 - H281DRAFT_00328 0.28 -0.6 359,334 + H281DRAFT_00328 0.29 -0.1 359,335 - H281DRAFT_00328 0.29 +0.6 359,445 + H281DRAFT_00328 0.35 +1.7 359,485 - +0.7 359,523 + H281DRAFT_00328 0.40 +1.3 359,557 - H281DRAFT_00328 0.42 -0.2 359,571 + H281DRAFT_00328 0.43 -0.5 359,610 + H281DRAFT_00328 0.45 +0.4 359,611 - H281DRAFT_00328 0.45 +0.4 359,641 - H281DRAFT_00328 0.47 +0.2 359,779 - H281DRAFT_00328 0.55 -0.6 360,093 + H281DRAFT_00328 0.73 +0.6 360,093 + +3.0 360,094 - H281DRAFT_00328 0.73 +0.8 360,094 - H281DRAFT_00328 0.73 +1.1 360,108 + H281DRAFT_00328 0.74 +0.0 360,108 + H281DRAFT_00328 0.74 +0.3 360,220 - H281DRAFT_00328 0.80 -0.7 360,220 - H281DRAFT_00328 0.80 +2.0 360,387 + +3.8 360,388 - H281DRAFT_00328 0.90 +0.5 360,399 + -1.1 360,400 - +0.0 360,445 - -2.2 360,692 - +0.3 361,214 - H281DRAFT_00329 0.19 +0.8
Or see this region's nucleotide sequence