Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_480

Experiment: Bacitracin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_478 and Ac3H11_479 overlap by 2 nucleotidesAc3H11_479 and Ac3H11_480 are separated by 84 nucleotidesAc3H11_480 and Ac3H11_481 are separated by 214 nucleotides Ac3H11_478 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 174,168 to 174,953 _478 Ac3H11_479 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 174,952 to 175,809 _479 Ac3H11_480 - Ribonuclease HI (EC 3.1.26.4), at 175,894 to 176,343 _480 Ac3H11_481 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 176,558 to 177,991 _481 Position (kb) 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.916 kb on + strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.917 kb on - strandat 174.966 kb on + strandat 174.966 kb on + strandat 174.966 kb on + strandat 174.966 kb on + strandat 174.967 kb on - strandat 174.967 kb on - strandat 174.967 kb on - strandat 174.968 kb on + strandat 174.969 kb on - strandat 175.007 kb on - strandat 175.063 kb on + strand, within Ac3H11_479at 175.064 kb on - strand, within Ac3H11_479at 175.123 kb on + strand, within Ac3H11_479at 175.124 kb on - strand, within Ac3H11_479at 175.432 kb on + strand, within Ac3H11_479at 175.459 kb on + strand, within Ac3H11_479at 175.459 kb on + strand, within Ac3H11_479at 175.459 kb on + strand, within Ac3H11_479at 175.459 kb on + strand, within Ac3H11_479at 175.649 kb on - strand, within Ac3H11_479at 175.649 kb on - strand, within Ac3H11_479at 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.808 kb on - strandat 175.808 kb on - strandat 175.808 kb on - strandat 175.808 kb on - strandat 175.808 kb on - strandat 175.808 kb on - strandat 175.808 kb on - strandat 175.811 kb on + strandat 175.811 kb on + strandat 175.811 kb on + strandat 175.811 kb on + strandat 175.811 kb on + strandat 175.811 kb on + strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.812 kb on - strandat 175.904 kb on + strandat 176.437 kb on + strandat 176.437 kb on + strandat 176.438 kb on - strandat 176.448 kb on + strandat 176.449 kb on - strandat 176.449 kb on - strandat 176.449 kb on - strandat 176.512 kb on + strandat 176.513 kb on - strandat 176.513 kb on - strandat 176.513 kb on - strandat 176.513 kb on - strandat 176.513 kb on - strandat 176.513 kb on - strandat 176.513 kb on - strandat 176.576 kb on + strandat 176.576 kb on + strandat 176.576 kb on + strandat 176.576 kb on + strandat 176.576 kb on + strandat 176.576 kb on + strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 176.577 kb on - strandat 177.185 kb on + strand, within Ac3H11_481at 177.185 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.329 kb on + strand, within Ac3H11_481

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.016 mg/ml
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174,916 + +0.2
174,916 + +0.2
174,916 + +1.8
174,916 + +1.1
174,916 + -0.7
174,916 + -0.8
174,916 + +0.1
174,916 + -2.4
174,916 + +0.9
174,917 - +0.5
174,917 - -3.3
174,917 - -0.7
174,917 - +0.2
174,917 - +0.4
174,917 - -0.1
174,917 - -1.0
174,917 - +0.6
174,917 - -0.8
174,917 - -1.4
174,966 + +0.0
174,966 + +0.7
174,966 + -0.2
174,966 + -0.3
174,967 - -1.4
174,967 - -1.2
174,967 - +0.6
174,968 + +0.9
174,969 - -1.9
175,007 - +0.4
175,063 + Ac3H11_479 0.13 -1.0
175,064 - Ac3H11_479 0.13 +0.0
175,123 + Ac3H11_479 0.20 -0.5
175,124 - Ac3H11_479 0.20 +1.9
175,432 + Ac3H11_479 0.56 +0.1
175,459 + Ac3H11_479 0.59 -0.8
175,459 + Ac3H11_479 0.59 -2.0
175,459 + Ac3H11_479 0.59 -1.9
175,459 + Ac3H11_479 0.59 +2.0
175,649 - Ac3H11_479 0.81 +0.9
175,649 - Ac3H11_479 0.81 +0.1
175,807 + +0.1
175,807 + +2.0
175,807 + +0.2
175,807 + -0.4
175,807 + -0.3
175,807 + +0.2
175,807 + +0.9
175,807 + -0.9
175,807 + +0.7
175,807 + +0.6
175,807 + +0.3
175,807 + +0.6
175,807 + -0.5
175,807 + +0.3
175,807 + -0.2
175,807 + +0.2
175,807 + +0.1
175,807 + +1.0
175,807 + +0.9
175,807 + +0.6
175,807 + -0.3
175,808 - -0.8
175,808 - +0.3
175,808 - +1.5
175,808 - -0.9
175,808 - +0.2
175,808 - +0.4
175,808 - +0.6
175,811 + -0.7
175,811 + +1.7
175,811 + -0.7
175,811 + -0.8
175,811 + -2.0
175,811 + +0.5
175,812 - +0.6
175,812 - +0.4
175,812 - -0.6
175,812 - -0.8
175,812 - +0.6
175,812 - +0.1
175,812 - -0.1
175,812 - -0.0
175,904 + -1.3
176,437 + -0.1
176,437 + +0.2
176,438 - +0.1
176,448 + -0.3
176,449 - +0.0
176,449 - -1.3
176,449 - +0.8
176,512 + -1.0
176,513 - +0.8
176,513 - -1.6
176,513 - +1.7
176,513 - +0.1
176,513 - -0.4
176,513 - -1.0
176,513 - +0.9
176,576 + +0.7
176,576 + +1.1
176,576 + -0.2
176,576 + +0.9
176,576 + +0.3
176,576 + -0.2
176,577 - +0.9
176,577 - -0.2
176,577 - +0.3
176,577 - -0.5
176,577 - +1.0
176,577 - +0.0
176,577 - +0.0
176,577 - +0.8
176,577 - -0.3
176,577 - -0.3
176,577 - -0.2
176,577 - -0.3
176,577 - -1.0
176,577 - +0.4
177,185 + Ac3H11_481 0.44 -0.4
177,185 + Ac3H11_481 0.44 -0.7
177,236 + Ac3H11_481 0.47 +0.2
177,236 + Ac3H11_481 0.47 -0.5
177,236 + Ac3H11_481 0.47 +0.1
177,236 + Ac3H11_481 0.47 +1.4
177,237 - Ac3H11_481 0.47 -0.3
177,237 - Ac3H11_481 0.47 -0.8
177,237 - Ac3H11_481 0.47 +0.8
177,237 - Ac3H11_481 0.47 +0.1
177,237 - Ac3H11_481 0.47 -2.7
177,329 + Ac3H11_481 0.54 -0.9

Or see this region's nucleotide sequence