Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4739

Experiment: Bacitracin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4738 and Ac3H11_4739 are separated by 164 nucleotidesAc3H11_4739 and Ac3H11_4740 are separated by 106 nucleotidesAc3H11_4740 and Ac3H11_4741 are separated by 62 nucleotidesAc3H11_4741 and Ac3H11_4742 are separated by 68 nucleotides Ac3H11_4738 - Ferredoxin reductase, at 43,666 to 44,715 _4738 Ac3H11_4739 - FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 44,880 to 45,236 _4739 Ac3H11_4740 - Twin-arginine translocation protein TatA, at 45,343 to 45,585 _4740 Ac3H11_4741 - Twin-arginine translocation protein TatB, at 45,648 to 46,109 _4741 Ac3H11_4742 - Twin-arginine translocation protein TatC, at 46,178 to 46,972 _4742 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 44.030 kb on - strand, within Ac3H11_4738at 44.049 kb on + strand, within Ac3H11_4738at 44.129 kb on + strand, within Ac3H11_4738at 44.278 kb on + strand, within Ac3H11_4738at 44.294 kb on - strand, within Ac3H11_4738at 44.294 kb on - strand, within Ac3H11_4738at 44.294 kb on - strand, within Ac3H11_4738at 44.326 kb on + strand, within Ac3H11_4738at 44.326 kb on + strand, within Ac3H11_4738at 44.327 kb on - strand, within Ac3H11_4738at 44.327 kb on - strand, within Ac3H11_4738at 44.518 kb on + strand, within Ac3H11_4738at 44.851 kb on - strandat 44.851 kb on - strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.858 kb on - strandat 44.858 kb on - strandat 44.858 kb on - strandat 44.858 kb on - strandat 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.024 kb on - strand, within Ac3H11_4739at 45.151 kb on + strand, within Ac3H11_4739at 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.016 mg/ml
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44,030 - Ac3H11_4738 0.35 +0.1
44,049 + Ac3H11_4738 0.36 +0.6
44,129 + Ac3H11_4738 0.44 +0.3
44,278 + Ac3H11_4738 0.58 +0.3
44,294 - Ac3H11_4738 0.60 -0.3
44,294 - Ac3H11_4738 0.60 +0.5
44,294 - Ac3H11_4738 0.60 +2.3
44,326 + Ac3H11_4738 0.63 +1.2
44,326 + Ac3H11_4738 0.63 -1.0
44,327 - Ac3H11_4738 0.63 -1.1
44,327 - Ac3H11_4738 0.63 -1.5
44,518 + Ac3H11_4738 0.81 +0.5
44,851 - +0.2
44,851 - +0.1
44,857 + -0.5
44,857 + -0.2
44,857 + +1.4
44,857 + -0.1
44,857 + +0.6
44,857 + +0.1
44,858 - -0.1
44,858 - -2.1
44,858 - -0.1
44,858 - +0.9
44,943 + Ac3H11_4739 0.18 +0.5
44,943 + Ac3H11_4739 0.18 +0.4
44,943 + Ac3H11_4739 0.18 +0.3
44,943 + Ac3H11_4739 0.18 +0.2
44,943 + Ac3H11_4739 0.18 +1.6
44,943 + Ac3H11_4739 0.18 -0.3
44,943 + Ac3H11_4739 0.18 -0.3
44,943 + Ac3H11_4739 0.18 -2.5
44,943 + Ac3H11_4739 0.18 +1.3
44,944 - Ac3H11_4739 0.18 -2.2
44,944 - Ac3H11_4739 0.18 -0.6
44,944 - Ac3H11_4739 0.18 -1.1
44,944 - Ac3H11_4739 0.18 -0.5
44,944 - Ac3H11_4739 0.18 -0.0
44,944 - Ac3H11_4739 0.18 +1.2
44,944 - Ac3H11_4739 0.18 +1.5
44,944 - Ac3H11_4739 0.18 +0.1
44,944 - Ac3H11_4739 0.18 +0.7
45,023 + Ac3H11_4739 0.40 -0.1
45,023 + Ac3H11_4739 0.40 -1.7
45,023 + Ac3H11_4739 0.40 -0.1
45,023 + Ac3H11_4739 0.40 -2.5
45,023 + Ac3H11_4739 0.40 +0.5
45,024 - Ac3H11_4739 0.40 -1.8
45,151 + Ac3H11_4739 0.76 -1.0
45,260 + +0.3
45,260 + -0.2
45,260 + -1.0
45,260 + -2.1
45,260 + -0.5
45,260 + -0.1

Or see this region's nucleotide sequence