Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4551

Experiment: Bacitracin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4550 and Ac3H11_4551 are separated by 34 nucleotidesAc3H11_4551 and Ac3H11_4552 are separated by 12 nucleotidesAc3H11_4552 and Ac3H11_4553 are separated by 36 nucleotides Ac3H11_4550 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 142,282 to 143,229 _4550 Ac3H11_4551 - Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1), at 143,264 to 144,070 _4551 Ac3H11_4552 - HD phosphohydrolase-like protein, at 144,083 to 144,667 _4552 Ac3H11_4553 - Transcriptional regulator, AsnC family, at 144,704 to 145,165 _4553 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.472 kb on - strand, within Ac3H11_4550at 142.609 kb on + strand, within Ac3H11_4550at 142.609 kb on + strand, within Ac3H11_4550at 142.612 kb on + strand, within Ac3H11_4550at 142.613 kb on - strand, within Ac3H11_4550at 142.741 kb on + strand, within Ac3H11_4550at 142.841 kb on + strand, within Ac3H11_4550at 142.842 kb on - strand, within Ac3H11_4550at 143.012 kb on - strand, within Ac3H11_4550at 143.018 kb on - strand, within Ac3H11_4550at 143.018 kb on - strand, within Ac3H11_4550at 143.018 kb on - strand, within Ac3H11_4550at 143.120 kb on + strand, within Ac3H11_4550at 143.120 kb on + strand, within Ac3H11_4550at 143.121 kb on - strand, within Ac3H11_4550at 143.121 kb on - strand, within Ac3H11_4550at 143.227 kb on + strandat 143.308 kb on + strandat 143.438 kb on + strand, within Ac3H11_4551at 143.438 kb on + strand, within Ac3H11_4551at 143.439 kb on - strand, within Ac3H11_4551at 143.483 kb on + strand, within Ac3H11_4551at 143.483 kb on + strand, within Ac3H11_4551at 143.483 kb on + strand, within Ac3H11_4551at 143.483 kb on + strand, within Ac3H11_4551at 143.483 kb on + strand, within Ac3H11_4551at 143.600 kb on + strand, within Ac3H11_4551at 143.600 kb on + strand, within Ac3H11_4551at 143.601 kb on - strand, within Ac3H11_4551at 143.601 kb on - strand, within Ac3H11_4551at 143.831 kb on + strand, within Ac3H11_4551at 143.831 kb on + strand, within Ac3H11_4551at 143.831 kb on + strand, within Ac3H11_4551at 143.832 kb on - strand, within Ac3H11_4551at 143.832 kb on - strand, within Ac3H11_4551at 143.832 kb on - strand, within Ac3H11_4551at 143.870 kb on + strand, within Ac3H11_4551at 143.870 kb on + strand, within Ac3H11_4551at 143.870 kb on + strand, within Ac3H11_4551at 143.871 kb on - strand, within Ac3H11_4551at 143.871 kb on - strand, within Ac3H11_4551at 143.871 kb on - strand, within Ac3H11_4551at 143.963 kb on - strand, within Ac3H11_4551at 144.140 kb on + strandat 144.141 kb on - strandat 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.305 kb on + strand, within Ac3H11_4552at 144.306 kb on - strand, within Ac3H11_4552at 144.306 kb on - strand, within Ac3H11_4552at 144.306 kb on - strand, within Ac3H11_4552at 144.306 kb on - strand, within Ac3H11_4552at 144.306 kb on - strand, within Ac3H11_4552at 144.386 kb on + strand, within Ac3H11_4552at 144.411 kb on - strand, within Ac3H11_4552at 144.536 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.587 kb on + strand, within Ac3H11_4552at 144.588 kb on - strand, within Ac3H11_4552at 144.588 kb on - strand, within Ac3H11_4552at 144.588 kb on - strand, within Ac3H11_4552at 144.588 kb on - strand, within Ac3H11_4552at 144.588 kb on - strand, within Ac3H11_4552at 144.819 kb on + strand, within Ac3H11_4553at 144.820 kb on - strand, within Ac3H11_4553

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.016 mg/ml
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142,472 - Ac3H11_4550 0.20 -0.5
142,609 + Ac3H11_4550 0.34 +0.1
142,609 + Ac3H11_4550 0.34 -3.4
142,612 + Ac3H11_4550 0.35 -0.7
142,613 - Ac3H11_4550 0.35 -0.8
142,741 + Ac3H11_4550 0.48 -0.2
142,841 + Ac3H11_4550 0.59 -0.4
142,842 - Ac3H11_4550 0.59 -2.2
143,012 - Ac3H11_4550 0.77 +0.5
143,018 - Ac3H11_4550 0.78 +0.6
143,018 - Ac3H11_4550 0.78 -0.4
143,018 - Ac3H11_4550 0.78 +1.0
143,120 + Ac3H11_4550 0.88 +1.4
143,120 + Ac3H11_4550 0.88 -0.5
143,121 - Ac3H11_4550 0.89 +0.5
143,121 - Ac3H11_4550 0.89 +0.4
143,227 + +0.2
143,308 + +0.0
143,438 + Ac3H11_4551 0.22 +0.1
143,438 + Ac3H11_4551 0.22 +1.5
143,439 - Ac3H11_4551 0.22 +1.0
143,483 + Ac3H11_4551 0.27 -0.1
143,483 + Ac3H11_4551 0.27 +0.4
143,483 + Ac3H11_4551 0.27 -0.0
143,483 + Ac3H11_4551 0.27 -2.8
143,483 + Ac3H11_4551 0.27 -0.5
143,600 + Ac3H11_4551 0.42 -0.9
143,600 + Ac3H11_4551 0.42 +1.7
143,601 - Ac3H11_4551 0.42 -0.8
143,601 - Ac3H11_4551 0.42 -0.7
143,831 + Ac3H11_4551 0.70 -1.1
143,831 + Ac3H11_4551 0.70 +0.1
143,831 + Ac3H11_4551 0.70 -0.4
143,832 - Ac3H11_4551 0.70 +0.4
143,832 - Ac3H11_4551 0.70 -0.6
143,832 - Ac3H11_4551 0.70 +0.5
143,870 + Ac3H11_4551 0.75 +1.0
143,870 + Ac3H11_4551 0.75 -0.6
143,870 + Ac3H11_4551 0.75 -0.8
143,871 - Ac3H11_4551 0.75 -0.2
143,871 - Ac3H11_4551 0.75 +0.5
143,871 - Ac3H11_4551 0.75 +1.0
143,963 - Ac3H11_4551 0.87 +0.2
144,140 + -1.1
144,141 - +0.4
144,305 + Ac3H11_4552 0.38 +0.7
144,305 + Ac3H11_4552 0.38 -1.2
144,305 + Ac3H11_4552 0.38 +0.2
144,305 + Ac3H11_4552 0.38 -0.0
144,305 + Ac3H11_4552 0.38 +2.5
144,305 + Ac3H11_4552 0.38 +0.5
144,305 + Ac3H11_4552 0.38 -0.1
144,305 + Ac3H11_4552 0.38 +0.6
144,305 + Ac3H11_4552 0.38 -0.0
144,305 + Ac3H11_4552 0.38 +1.4
144,306 - Ac3H11_4552 0.38 +1.2
144,306 - Ac3H11_4552 0.38 -1.3
144,306 - Ac3H11_4552 0.38 +0.0
144,306 - Ac3H11_4552 0.38 +0.1
144,306 - Ac3H11_4552 0.38 -0.3
144,386 + Ac3H11_4552 0.52 +0.8
144,411 - Ac3H11_4552 0.56 +0.7
144,536 + Ac3H11_4552 0.77 +2.3
144,587 + Ac3H11_4552 0.86 +1.5
144,587 + Ac3H11_4552 0.86 +1.3
144,587 + Ac3H11_4552 0.86 +0.7
144,587 + Ac3H11_4552 0.86 +0.4
144,587 + Ac3H11_4552 0.86 +0.4
144,587 + Ac3H11_4552 0.86 +0.0
144,587 + Ac3H11_4552 0.86 +0.8
144,587 + Ac3H11_4552 0.86 +0.5
144,587 + Ac3H11_4552 0.86 +1.0
144,587 + Ac3H11_4552 0.86 +0.8
144,587 + Ac3H11_4552 0.86 +0.1
144,587 + Ac3H11_4552 0.86 +0.5
144,588 - Ac3H11_4552 0.86 +1.1
144,588 - Ac3H11_4552 0.86 -0.8
144,588 - Ac3H11_4552 0.86 -1.1
144,588 - Ac3H11_4552 0.86 -0.1
144,588 - Ac3H11_4552 0.86 +0.3
144,819 + Ac3H11_4553 0.25 -0.9
144,820 - Ac3H11_4553 0.25 -0.5

Or see this region's nucleotide sequence