Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3804

Experiment: Bacitracin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3803 and Ac3H11_3804 are separated by 370 nucleotidesAc3H11_3804 and Ac3H11_3805 overlap by 4 nucleotides Ac3H11_3803 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 13,486 to 16,455 _3803 Ac3H11_3804 - Putative formate dehydrogenase-specific chaperone, at 16,826 to 17,461 _3804 Ac3H11_3805 - Iron-sulfur cluster-binding protein, at 17,458 to 19,527 _3805 Position (kb) 16 17 18Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 15.887 kb on + strand, within Ac3H11_3803at 15.887 kb on + strand, within Ac3H11_3803at 15.887 kb on + strand, within Ac3H11_3803at 15.888 kb on - strand, within Ac3H11_3803at 15.888 kb on - strand, within Ac3H11_3803at 15.888 kb on - strand, within Ac3H11_3803at 15.888 kb on - strand, within Ac3H11_3803at 15.926 kb on + strand, within Ac3H11_3803at 15.926 kb on + strand, within Ac3H11_3803at 15.927 kb on - strand, within Ac3H11_3803at 15.927 kb on - strand, within Ac3H11_3803at 15.927 kb on - strand, within Ac3H11_3803at 15.927 kb on - strand, within Ac3H11_3803at 15.927 kb on - strand, within Ac3H11_3803at 16.013 kb on + strand, within Ac3H11_3803at 16.013 kb on + strand, within Ac3H11_3803at 16.013 kb on + strand, within Ac3H11_3803at 16.013 kb on + strand, within Ac3H11_3803at 16.013 kb on + strand, within Ac3H11_3803at 16.013 kb on + strand, within Ac3H11_3803at 16.014 kb on - strand, within Ac3H11_3803at 16.014 kb on - strand, within Ac3H11_3803at 16.014 kb on - strand, within Ac3H11_3803at 16.014 kb on - strand, within Ac3H11_3803at 16.014 kb on - strand, within Ac3H11_3803at 16.053 kb on - strand, within Ac3H11_3803at 16.203 kb on + strandat 16.203 kb on + strandat 16.203 kb on + strandat 16.203 kb on + strandat 16.204 kb on - strandat 16.204 kb on - strandat 16.204 kb on - strandat 16.488 kb on + strandat 16.488 kb on + strandat 16.488 kb on + strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.491 kb on + strandat 16.491 kb on + strandat 16.491 kb on + strandat 16.491 kb on + strandat 16.492 kb on - strandat 16.492 kb on - strandat 16.519 kb on - strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.704 kb on + strandat 16.704 kb on + strandat 16.705 kb on - strandat 16.720 kb on + strandat 16.720 kb on + strandat 16.721 kb on - strandat 16.721 kb on - strandat 16.721 kb on - strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.728 kb on - strandat 16.728 kb on - strandat 16.739 kb on + strandat 16.739 kb on + strandat 16.773 kb on - strandat 16.790 kb on + strandat 16.827 kb on + strandat 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.026 kb on - strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.157 kb on + strand, within Ac3H11_3804at 17.157 kb on + strand, within Ac3H11_3804at 17.169 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.359 kb on - strand, within Ac3H11_3804at 17.359 kb on - strand, within Ac3H11_3804at 17.359 kb on - strand, within Ac3H11_3804at 17.361 kb on + strand, within Ac3H11_3804at 17.361 kb on + strand, within Ac3H11_3804at 17.361 kb on + strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.383 kb on - strand, within Ac3H11_3804at 17.383 kb on - strand, within Ac3H11_3804at 17.383 kb on - strand, within Ac3H11_3804at 17.495 kb on + strandat 17.495 kb on + strandat 17.496 kb on - strandat 18.113 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.174 kb on - strand, within Ac3H11_3805at 18.225 kb on - strand, within Ac3H11_3805at 18.225 kb on - strand, within Ac3H11_3805at 18.386 kb on - strand, within Ac3H11_3805at 18.386 kb on - strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.414 kb on - strand, within Ac3H11_3805at 18.414 kb on - strand, within Ac3H11_3805at 18.414 kb on - strand, within Ac3H11_3805

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.016 mg/ml
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15,887 + Ac3H11_3803 0.81 -0.1
15,887 + Ac3H11_3803 0.81 +0.1
15,887 + Ac3H11_3803 0.81 +1.1
15,888 - Ac3H11_3803 0.81 +0.9
15,888 - Ac3H11_3803 0.81 -0.2
15,888 - Ac3H11_3803 0.81 +1.4
15,888 - Ac3H11_3803 0.81 +0.4
15,926 + Ac3H11_3803 0.82 +0.2
15,926 + Ac3H11_3803 0.82 +0.4
15,927 - Ac3H11_3803 0.82 -0.5
15,927 - Ac3H11_3803 0.82 +0.6
15,927 - Ac3H11_3803 0.82 -0.0
15,927 - Ac3H11_3803 0.82 +0.5
15,927 - Ac3H11_3803 0.82 -0.0
16,013 + Ac3H11_3803 0.85 -1.4
16,013 + Ac3H11_3803 0.85 +1.5
16,013 + Ac3H11_3803 0.85 -0.4
16,013 + Ac3H11_3803 0.85 -0.2
16,013 + Ac3H11_3803 0.85 +0.6
16,013 + Ac3H11_3803 0.85 -0.6
16,014 - Ac3H11_3803 0.85 -0.0
16,014 - Ac3H11_3803 0.85 -0.5
16,014 - Ac3H11_3803 0.85 +0.3
16,014 - Ac3H11_3803 0.85 +1.1
16,014 - Ac3H11_3803 0.85 +0.4
16,053 - Ac3H11_3803 0.86 -1.3
16,203 + -1.6
16,203 + +0.4
16,203 + +0.9
16,203 + +1.3
16,204 - +0.5
16,204 - +0.9
16,204 - +0.6
16,488 + +0.9
16,488 + +1.0
16,488 + +0.4
16,489 - -0.2
16,489 - -0.5
16,489 - +0.4
16,489 - +0.8
16,489 - +0.4
16,489 - -0.2
16,491 + -0.6
16,491 + -0.1
16,491 + +1.2
16,491 + +0.6
16,492 - +0.7
16,492 - -0.2
16,519 - -0.2
16,580 + -1.6
16,580 + +1.6
16,580 + +0.3
16,580 + -0.5
16,580 + +0.8
16,580 + +0.3
16,580 + +0.9
16,580 + -1.7
16,580 + -1.3
16,580 + +0.3
16,581 - -1.2
16,581 - +0.7
16,581 - -0.9
16,581 - +0.4
16,581 - +0.2
16,581 - +0.7
16,581 - -0.0
16,581 - +0.2
16,581 - -0.3
16,581 - -0.9
16,581 - -0.3
16,581 - -0.3
16,704 + +1.1
16,704 + +0.5
16,705 - +0.1
16,720 + +0.5
16,720 + -0.7
16,721 - +0.5
16,721 - +0.9
16,721 - -1.7
16,727 + -1.0
16,727 + +0.2
16,727 + +0.7
16,727 + -0.0
16,727 + -0.3
16,728 - -1.3
16,728 - +1.2
16,739 + +0.2
16,739 + +0.2
16,773 - +0.0
16,790 + -0.5
16,827 + -0.1
16,896 + Ac3H11_3804 0.11 -0.5
16,896 + Ac3H11_3804 0.11 +1.0
16,896 + Ac3H11_3804 0.11 +1.0
16,896 + Ac3H11_3804 0.11 +0.7
16,896 + Ac3H11_3804 0.11 -1.1
16,896 + Ac3H11_3804 0.11 -0.5
16,896 + Ac3H11_3804 0.11 -1.0
16,896 + Ac3H11_3804 0.11 +0.9
16,897 - Ac3H11_3804 0.11 -0.8
16,897 - Ac3H11_3804 0.11 -3.8
16,897 - Ac3H11_3804 0.11 -0.3
16,897 - Ac3H11_3804 0.11 -2.5
17,025 + Ac3H11_3804 0.31 -0.4
17,025 + Ac3H11_3804 0.31 -0.2
17,025 + Ac3H11_3804 0.31 -0.4
17,025 + Ac3H11_3804 0.31 -0.5
17,026 - Ac3H11_3804 0.31 -0.4
17,046 + Ac3H11_3804 0.35 +0.6
17,046 + Ac3H11_3804 0.35 +0.1
17,046 + Ac3H11_3804 0.35 -0.5
17,046 + Ac3H11_3804 0.35 -0.8
17,157 + Ac3H11_3804 0.52 +0.3
17,157 + Ac3H11_3804 0.52 -3.4
17,169 + Ac3H11_3804 0.54 +0.6
17,358 + Ac3H11_3804 0.84 +0.1
17,358 + Ac3H11_3804 0.84 +1.6
17,358 + Ac3H11_3804 0.84 -0.5
17,358 + Ac3H11_3804 0.84 +1.2
17,358 + Ac3H11_3804 0.84 +0.1
17,358 + Ac3H11_3804 0.84 +1.3
17,359 - Ac3H11_3804 0.84 +1.5
17,359 - Ac3H11_3804 0.84 -0.6
17,359 - Ac3H11_3804 0.84 -0.2
17,361 + Ac3H11_3804 0.84 -0.7
17,361 + Ac3H11_3804 0.84 -0.9
17,361 + Ac3H11_3804 0.84 -0.2
17,362 - Ac3H11_3804 0.84 -0.4
17,362 - Ac3H11_3804 0.84 -1.1
17,362 - Ac3H11_3804 0.84 +0.1
17,362 - Ac3H11_3804 0.84 -0.2
17,362 - Ac3H11_3804 0.84 -0.6
17,362 - Ac3H11_3804 0.84 -0.6
17,362 - Ac3H11_3804 0.84 +0.0
17,382 + Ac3H11_3804 0.87 +0.7
17,382 + Ac3H11_3804 0.87 +0.1
17,382 + Ac3H11_3804 0.87 +0.4
17,382 + Ac3H11_3804 0.87 +0.5
17,382 + Ac3H11_3804 0.87 -0.6
17,383 - Ac3H11_3804 0.88 +0.6
17,383 - Ac3H11_3804 0.88 -1.6
17,383 - Ac3H11_3804 0.88 +0.8
17,495 + -0.1
17,495 + -0.1
17,496 - +0.3
18,113 + Ac3H11_3805 0.32 +0.6
18,173 + Ac3H11_3805 0.35 +1.6
18,173 + Ac3H11_3805 0.35 +0.8
18,173 + Ac3H11_3805 0.35 +1.4
18,173 + Ac3H11_3805 0.35 +0.5
18,174 - Ac3H11_3805 0.35 -0.1
18,225 - Ac3H11_3805 0.37 -0.7
18,225 - Ac3H11_3805 0.37 -0.1
18,386 - Ac3H11_3805 0.45 +0.6
18,386 - Ac3H11_3805 0.45 +0.2
18,413 + Ac3H11_3805 0.46 +0.1
18,413 + Ac3H11_3805 0.46 -0.9
18,413 + Ac3H11_3805 0.46 +0.4
18,413 + Ac3H11_3805 0.46 +0.5
18,413 + Ac3H11_3805 0.46 -2.1
18,414 - Ac3H11_3805 0.46 -1.1
18,414 - Ac3H11_3805 0.46 +0.1
18,414 - Ac3H11_3805 0.46 -0.8

Or see this region's nucleotide sequence