Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1819

Experiment: Bacitracin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1817 and Ac3H11_1818 are separated by 48 nucleotidesAc3H11_1818 and Ac3H11_1819 are separated by 29 nucleotidesAc3H11_1819 and Ac3H11_1820 are separated by 15 nucleotides Ac3H11_1817 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 22,284 to 23,225 _1817 Ac3H11_1818 - Dihydroneopterin aldolase (EC 4.1.2.25), at 23,274 to 23,648 _1818 Ac3H11_1819 - FolM Alternative dihydrofolate reductase 1, at 23,678 to 24,463 _1819 Ac3H11_1820 - COG1565: Uncharacterized conserved protein, at 24,479 to 25,597 _1820 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 22.787 kb on - strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.912 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.219 kb on + strandat 23.219 kb on + strandat 23.220 kb on - strandat 23.973 kb on + strand, within Ac3H11_1819at 23.974 kb on - strand, within Ac3H11_1819at 24.318 kb on - strand, within Ac3H11_1819at 24.318 kb on - strand, within Ac3H11_1819at 24.457 kb on + strandat 24.457 kb on + strandat 24.458 kb on - strandat 24.458 kb on - strandat 24.458 kb on - strandat 24.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.016 mg/ml
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22,787 - Ac3H11_1817 0.53 +0.5
22,864 + Ac3H11_1817 0.62 +1.3
22,864 + Ac3H11_1817 0.62 +0.2
22,864 + Ac3H11_1817 0.62 +0.2
22,864 + Ac3H11_1817 0.62 -0.3
22,864 + Ac3H11_1817 0.62 -0.0
22,864 + Ac3H11_1817 0.62 +0.4
22,864 + Ac3H11_1817 0.62 -0.0
22,864 + Ac3H11_1817 0.62 +0.2
22,864 + Ac3H11_1817 0.62 +0.4
22,864 + Ac3H11_1817 0.62 -1.5
22,864 + Ac3H11_1817 0.62 -0.4
22,864 + Ac3H11_1817 0.62 +1.0
22,864 + Ac3H11_1817 0.62 +0.6
22,865 - Ac3H11_1817 0.62 +1.2
22,865 - Ac3H11_1817 0.62 -2.7
22,865 - Ac3H11_1817 0.62 +1.0
22,865 - Ac3H11_1817 0.62 -1.8
22,865 - Ac3H11_1817 0.62 +0.6
22,865 - Ac3H11_1817 0.62 +0.5
22,865 - Ac3H11_1817 0.62 -0.8
22,865 - Ac3H11_1817 0.62 +0.1
22,865 - Ac3H11_1817 0.62 +1.7
22,865 - Ac3H11_1817 0.62 +1.6
22,912 + Ac3H11_1817 0.67 -1.2
23,029 + Ac3H11_1817 0.79 -0.7
23,029 + Ac3H11_1817 0.79 +1.4
23,029 + Ac3H11_1817 0.79 -0.1
23,029 + Ac3H11_1817 0.79 +0.2
23,029 + Ac3H11_1817 0.79 -0.1
23,029 + Ac3H11_1817 0.79 -0.0
23,029 + Ac3H11_1817 0.79 +2.7
23,029 + Ac3H11_1817 0.79 +0.8
23,029 + Ac3H11_1817 0.79 +0.6
23,029 + Ac3H11_1817 0.79 +0.3
23,029 + Ac3H11_1817 0.79 +0.7
23,030 - Ac3H11_1817 0.79 -1.3
23,030 - Ac3H11_1817 0.79 -0.2
23,030 - Ac3H11_1817 0.79 +1.3
23,030 - Ac3H11_1817 0.79 +0.5
23,030 - Ac3H11_1817 0.79 +1.8
23,030 - Ac3H11_1817 0.79 +1.4
23,030 - Ac3H11_1817 0.79 -0.1
23,219 + +0.5
23,219 + +1.2
23,220 - +0.2
23,973 + Ac3H11_1819 0.38 -0.8
23,974 - Ac3H11_1819 0.38 -3.5
24,318 - Ac3H11_1819 0.81 -2.4
24,318 - Ac3H11_1819 0.81 -2.6
24,457 + -2.8
24,457 + -1.9
24,458 - -0.9
24,458 - -0.6
24,458 - -0.2
24,458 - +0.5

Or see this region's nucleotide sequence