Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1170

Experiment: Bacitracin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1169 and Ac3H11_1170 overlap by 29 nucleotidesAc3H11_1170 and Ac3H11_1171 are separated by 99 nucleotidesAc3H11_1171 and Ac3H11_1172 are separated by 119 nucleotides Ac3H11_1169 - TPR Domain containing protein, at 4,403 to 7,969 _1169 Ac3H11_1170 - Adenylate cyclase (EC 4.6.1.1), at 7,941 to 9,953 _1170 Ac3H11_1171 - Ribosomal subunit interface protein, at 10,053 to 10,403 _1171 Ac3H11_1172 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 10,523 to 11,488 _1172 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7.005 kb on - strand, within Ac3H11_1169at 7.136 kb on + strand, within Ac3H11_1169at 7.136 kb on + strand, within Ac3H11_1169at 7.136 kb on + strand, within Ac3H11_1169at 7.137 kb on - strand, within Ac3H11_1169at 7.137 kb on - strand, within Ac3H11_1169at 7.259 kb on + strand, within Ac3H11_1169at 7.260 kb on - strand, within Ac3H11_1169at 7.629 kb on - strandat 7.637 kb on + strandat 7.637 kb on + strandat 7.637 kb on + strandat 7.637 kb on + strandat 7.638 kb on - strandat 7.638 kb on - strandat 7.638 kb on - strandat 7.638 kb on - strandat 7.644 kb on - strandat 7.667 kb on + strandat 7.667 kb on + strandat 7.668 kb on - strandat 7.668 kb on - strandat 7.668 kb on - strandat 7.700 kb on + strandat 7.700 kb on + strandat 7.700 kb on + strandat 7.700 kb on + strandat 7.701 kb on - strandat 7.757 kb on + strandat 7.853 kb on + strandat 7.854 kb on - strandat 7.940 kb on + strandat 7.940 kb on + strandat 7.940 kb on + strandat 7.941 kb on - strandat 8.182 kb on + strand, within Ac3H11_1170at 8.182 kb on + strand, within Ac3H11_1170at 8.628 kb on + strand, within Ac3H11_1170at 8.628 kb on + strand, within Ac3H11_1170at 8.631 kb on + strand, within Ac3H11_1170at 8.632 kb on - strand, within Ac3H11_1170at 8.823 kb on + strand, within Ac3H11_1170at 8.824 kb on - strandat 9.052 kb on - strand, within Ac3H11_1170at 9.052 kb on - strand, within Ac3H11_1170at 9.075 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.126 kb on + strand, within Ac3H11_1170at 9.127 kb on - strand, within Ac3H11_1170at 9.127 kb on - strand, within Ac3H11_1170at 9.288 kb on + strand, within Ac3H11_1170at 9.288 kb on + strand, within Ac3H11_1170at 9.558 kb on + strand, within Ac3H11_1170at 9.558 kb on + strand, within Ac3H11_1170at 9.559 kb on - strand, within Ac3H11_1170at 9.697 kb on + strand, within Ac3H11_1170at 9.697 kb on + strand, within Ac3H11_1170at 9.697 kb on + strand, within Ac3H11_1170at 9.697 kb on + strand, within Ac3H11_1170at 9.698 kb on - strand, within Ac3H11_1170at 9.698 kb on - strand, within Ac3H11_1170at 9.698 kb on - strand, within Ac3H11_1170at 9.698 kb on - strand, within Ac3H11_1170at 9.698 kb on - strand, within Ac3H11_1170at 9.951 kb on + strandat 9.952 kb on - strandat 9.996 kb on + strandat 10.060 kb on + strandat 10.060 kb on + strandat 10.061 kb on - strandat 10.061 kb on - strandat 10.061 kb on - strandat 10.061 kb on - strandat 10.449 kb on + strandat 10.449 kb on + strandat 10.449 kb on + strandat 10.450 kb on - strandat 10.453 kb on + strandat 10.453 kb on + strandat 10.454 kb on - strandat 10.454 kb on - strandat 10.461 kb on + strandat 10.461 kb on + strandat 10.465 kb on - strandat 10.535 kb on + strandat 10.536 kb on - strandat 10.536 kb on - strandat 10.611 kb on + strandat 10.611 kb on + strandat 10.611 kb on + strandat 10.612 kb on - strandat 10.612 kb on - strandat 10.612 kb on - strandat 10.612 kb on - strandat 10.612 kb on - strandat 10.750 kb on - strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.911 kb on + strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172at 10.912 kb on - strand, within Ac3H11_1172

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.016 mg/ml
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7,005 - Ac3H11_1169 0.73 +0.5
7,136 + Ac3H11_1169 0.77 +0.1
7,136 + Ac3H11_1169 0.77 +0.9
7,136 + Ac3H11_1169 0.77 -0.8
7,137 - Ac3H11_1169 0.77 -1.5
7,137 - Ac3H11_1169 0.77 +0.9
7,259 + Ac3H11_1169 0.80 -1.4
7,260 - Ac3H11_1169 0.80 +0.0
7,629 - -3.1
7,637 + +1.0
7,637 + +0.7
7,637 + -0.4
7,637 + +0.5
7,638 - -0.1
7,638 - +0.3
7,638 - +0.2
7,638 - -2.5
7,644 - -1.6
7,667 + -2.5
7,667 + -3.5
7,668 - -1.2
7,668 - -0.3
7,668 - -0.4
7,700 + -0.8
7,700 + +0.2
7,700 + -0.4
7,700 + -0.1
7,701 - -1.8
7,757 + +0.7
7,853 + -1.9
7,854 - +0.5
7,940 + -1.6
7,940 + -0.2
7,940 + +1.0
7,941 - +0.4
8,182 + Ac3H11_1170 0.12 +1.2
8,182 + Ac3H11_1170 0.12 -1.0
8,628 + Ac3H11_1170 0.34 +0.1
8,628 + Ac3H11_1170 0.34 -0.6
8,631 + Ac3H11_1170 0.34 -1.6
8,632 - Ac3H11_1170 0.34 -1.0
8,823 + Ac3H11_1170 0.44 +0.3
8,824 - +0.7
9,052 - Ac3H11_1170 0.55 -0.1
9,052 - Ac3H11_1170 0.55 -0.6
9,075 + Ac3H11_1170 0.56 +0.3
9,126 + Ac3H11_1170 0.59 -0.6
9,126 + Ac3H11_1170 0.59 -0.4
9,126 + Ac3H11_1170 0.59 -1.1
9,126 + Ac3H11_1170 0.59 -1.2
9,126 + Ac3H11_1170 0.59 +0.6
9,126 + Ac3H11_1170 0.59 -0.6
9,126 + Ac3H11_1170 0.59 +0.0
9,126 + Ac3H11_1170 0.59 -0.8
9,127 - Ac3H11_1170 0.59 +0.7
9,127 - Ac3H11_1170 0.59 -0.2
9,288 + Ac3H11_1170 0.67 -2.0
9,288 + Ac3H11_1170 0.67 -0.1
9,558 + Ac3H11_1170 0.80 -0.4
9,558 + Ac3H11_1170 0.80 -0.5
9,559 - Ac3H11_1170 0.80 +0.1
9,697 + Ac3H11_1170 0.87 -0.4
9,697 + Ac3H11_1170 0.87 -0.8
9,697 + Ac3H11_1170 0.87 +1.3
9,697 + Ac3H11_1170 0.87 -0.8
9,698 - Ac3H11_1170 0.87 +0.2
9,698 - Ac3H11_1170 0.87 +2.4
9,698 - Ac3H11_1170 0.87 +0.0
9,698 - Ac3H11_1170 0.87 -0.9
9,698 - Ac3H11_1170 0.87 -1.3
9,951 + +1.4
9,952 - +0.6
9,996 + +0.3
10,060 + -0.4
10,060 + +1.7
10,061 - +0.5
10,061 - +0.4
10,061 - +0.5
10,061 - -0.9
10,449 + -0.1
10,449 + +0.0
10,449 + +0.3
10,450 - +0.4
10,453 + -0.9
10,453 + +0.4
10,454 - -0.1
10,454 - +0.9
10,461 + -0.0
10,461 + +0.7
10,465 - +0.0
10,535 + +0.7
10,536 - +0.6
10,536 - +0.5
10,611 + +0.1
10,611 + +0.2
10,611 + +1.5
10,612 - -1.6
10,612 - +0.3
10,612 - -0.3
10,612 - +0.8
10,612 - +1.0
10,750 - Ac3H11_1172 0.23 -0.2
10,911 + Ac3H11_1172 0.40 -0.2
10,911 + Ac3H11_1172 0.40 -0.0
10,911 + Ac3H11_1172 0.40 -0.1
10,911 + Ac3H11_1172 0.40 +1.1
10,911 + Ac3H11_1172 0.40 -1.4
10,911 + Ac3H11_1172 0.40 -0.2
10,911 + Ac3H11_1172 0.40 -1.9
10,912 - Ac3H11_1172 0.40 -0.8
10,912 - Ac3H11_1172 0.40 +0.1
10,912 - Ac3H11_1172 0.40 -0.7
10,912 - Ac3H11_1172 0.40 +0.4
10,912 - Ac3H11_1172 0.40 +0.6
10,912 - Ac3H11_1172 0.40 +1.1
10,912 - Ac3H11_1172 0.40 -0.5
10,912 - Ac3H11_1172 0.40 -0.9
10,912 - Ac3H11_1172 0.40 -0.5
10,912 - Ac3H11_1172 0.40 -1.3

Or see this region's nucleotide sequence