Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33530

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS33525 and AZOBR_RS33530 are separated by 242 nucleotidesAZOBR_RS33530 and AZOBR_RS33535 overlap by 4 nucleotides AZOBR_RS33525: AZOBR_RS33525 - FAD-dependent oxidoreductase, at 36,529 to 37,650 _RS33525 AZOBR_RS33530: AZOBR_RS33530 - hypothetical protein, at 37,893 to 39,236 _RS33530 AZOBR_RS33535: AZOBR_RS33535 - glycosyl transferase family 1, at 39,233 to 40,480 _RS33535 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 37.193 kb on + strand, within AZOBR_RS33525at 37.193 kb on + strand, within AZOBR_RS33525at 37.222 kb on + strand, within AZOBR_RS33525at 37.222 kb on + strand, within AZOBR_RS33525at 37.223 kb on - strand, within AZOBR_RS33525at 37.226 kb on - strand, within AZOBR_RS33525at 37.226 kb on - strand, within AZOBR_RS33525at 37.418 kb on - strand, within AZOBR_RS33525at 37.418 kb on - strand, within AZOBR_RS33525at 37.474 kb on + strand, within AZOBR_RS33525at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.473 kb on + strand, within AZOBR_RS33530at 38.546 kb on - strand, within AZOBR_RS33530at 38.546 kb on - strand, within AZOBR_RS33530at 38.546 kb on - strand, within AZOBR_RS33530at 38.561 kb on - strand, within AZOBR_RS33530at 38.624 kb on - strand, within AZOBR_RS33530at 38.767 kb on + strand, within AZOBR_RS33530at 38.768 kb on - strand, within AZOBR_RS33530at 38.768 kb on - strand, within AZOBR_RS33530at 38.854 kb on + strand, within AZOBR_RS33530at 38.855 kb on - strand, within AZOBR_RS33530at 38.855 kb on - strand, within AZOBR_RS33530at 39.151 kb on + strandat 39.151 kb on + strandat 39.152 kb on - strandat 39.152 kb on - strandat 39.152 kb on - strandat 39.160 kb on + strandat 39.161 kb on - strandat 39.197 kb on - strandat 39.214 kb on + strandat 39.325 kb on - strandat 39.325 kb on - strandat 39.552 kb on + strand, within AZOBR_RS33535at 39.553 kb on - strand, within AZOBR_RS33535at 39.553 kb on - strand, within AZOBR_RS33535at 39.553 kb on - strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.562 kb on - strand, within AZOBR_RS33535at 39.562 kb on - strand, within AZOBR_RS33535at 39.562 kb on - strand, within AZOBR_RS33535at 39.597 kb on + strand, within AZOBR_RS33535at 39.598 kb on - strand, within AZOBR_RS33535at 39.598 kb on - strand, within AZOBR_RS33535at 39.681 kb on + strand, within AZOBR_RS33535at 39.682 kb on - strand, within AZOBR_RS33535at 39.711 kb on + strand, within AZOBR_RS33535at 39.712 kb on - strand, within AZOBR_RS33535at 39.831 kb on + strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.957 kb on + strand, within AZOBR_RS33535at 39.957 kb on + strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 40.119 kb on + strand, within AZOBR_RS33535at 40.119 kb on + strand, within AZOBR_RS33535at 40.120 kb on - strand, within AZOBR_RS33535at 40.120 kb on - strand, within AZOBR_RS33535at 40.135 kb on - strand, within AZOBR_RS33535at 40.135 kb on - strand, within AZOBR_RS33535at 40.173 kb on + strand, within AZOBR_RS33535at 40.173 kb on + strand, within AZOBR_RS33535at 40.173 kb on + strand, within AZOBR_RS33535at 40.174 kb on - strand, within AZOBR_RS33535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
37,193 + AZOBR_RS33525 0.59 +0.6
37,193 + AZOBR_RS33525 0.59 +0.3
37,222 + AZOBR_RS33525 0.62 +0.8
37,222 + AZOBR_RS33525 0.62 +0.5
37,223 - AZOBR_RS33525 0.62 +0.6
37,226 - AZOBR_RS33525 0.62 +0.7
37,226 - AZOBR_RS33525 0.62 +0.0
37,418 - AZOBR_RS33525 0.79 +0.1
37,418 - AZOBR_RS33525 0.79 -0.0
37,474 + AZOBR_RS33525 0.84 +0.9
38,326 + AZOBR_RS33530 0.32 +0.4
38,326 + AZOBR_RS33530 0.32 +0.7
38,326 + AZOBR_RS33530 0.32 +0.8
38,326 + AZOBR_RS33530 0.32 +0.5
38,326 + AZOBR_RS33530 0.32 -0.2
38,326 + AZOBR_RS33530 0.32 +0.8
38,327 - AZOBR_RS33530 0.32 -1.4
38,327 - AZOBR_RS33530 0.32 +0.6
38,327 - AZOBR_RS33530 0.32 +0.3
38,327 - AZOBR_RS33530 0.32 +0.4
38,327 - AZOBR_RS33530 0.32 +0.0
38,327 - AZOBR_RS33530 0.32 +0.6
38,327 - AZOBR_RS33530 0.32 +0.2
38,473 + AZOBR_RS33530 0.43 +0.0
38,546 - AZOBR_RS33530 0.49 +1.5
38,546 - AZOBR_RS33530 0.49 +0.2
38,546 - AZOBR_RS33530 0.49 +0.0
38,561 - AZOBR_RS33530 0.50 +0.1
38,624 - AZOBR_RS33530 0.54 +0.0
38,767 + AZOBR_RS33530 0.65 +0.1
38,768 - AZOBR_RS33530 0.65 +0.7
38,768 - AZOBR_RS33530 0.65 +0.6
38,854 + AZOBR_RS33530 0.72 +0.5
38,855 - AZOBR_RS33530 0.72 -0.7
38,855 - AZOBR_RS33530 0.72 +0.4
39,151 + -0.2
39,151 + +0.0
39,152 - +0.9
39,152 - +0.3
39,152 - +1.0
39,160 + +0.3
39,161 - -0.9
39,197 - +0.2
39,214 + +0.6
39,325 - -3.3
39,325 - -2.9
39,552 + AZOBR_RS33535 0.26 -3.5
39,553 - AZOBR_RS33535 0.26 -2.0
39,553 - AZOBR_RS33535 0.26 -2.3
39,553 - AZOBR_RS33535 0.26 -2.0
39,561 + AZOBR_RS33535 0.26 -3.4
39,561 + AZOBR_RS33535 0.26 -3.8
39,561 + AZOBR_RS33535 0.26 -3.1
39,561 + AZOBR_RS33535 0.26 -3.0
39,561 + AZOBR_RS33535 0.26 -3.7
39,562 - AZOBR_RS33535 0.26 -2.0
39,562 - AZOBR_RS33535 0.26 -2.8
39,562 - AZOBR_RS33535 0.26 -2.6
39,597 + AZOBR_RS33535 0.29 -2.5
39,598 - AZOBR_RS33535 0.29 -4.8
39,598 - AZOBR_RS33535 0.29 -1.6
39,681 + AZOBR_RS33535 0.36 -2.9
39,682 - AZOBR_RS33535 0.36 -3.8
39,711 + AZOBR_RS33535 0.38 -1.9
39,712 - AZOBR_RS33535 0.38 -2.5
39,831 + AZOBR_RS33535 0.48 -3.5
39,832 - AZOBR_RS33535 0.48 -2.1
39,832 - AZOBR_RS33535 0.48 -2.1
39,832 - AZOBR_RS33535 0.48 -2.9
39,832 - AZOBR_RS33535 0.48 -1.3
39,832 - AZOBR_RS33535 0.48 -3.1
39,832 - AZOBR_RS33535 0.48 -1.0
39,957 + AZOBR_RS33535 0.58 -1.5
39,957 + AZOBR_RS33535 0.58 -2.9
39,958 - AZOBR_RS33535 0.58 -2.9
39,958 - AZOBR_RS33535 0.58 -3.3
39,958 - AZOBR_RS33535 0.58 -2.4
39,958 - AZOBR_RS33535 0.58 -0.9
39,958 - AZOBR_RS33535 0.58 -3.4
40,119 + AZOBR_RS33535 0.71 -3.0
40,119 + AZOBR_RS33535 0.71 -1.9
40,120 - AZOBR_RS33535 0.71 -2.2
40,120 - AZOBR_RS33535 0.71 -2.8
40,135 - AZOBR_RS33535 0.72 -2.5
40,135 - AZOBR_RS33535 0.72 -1.3
40,173 + AZOBR_RS33535 0.75 -2.1
40,173 + AZOBR_RS33535 0.75 -3.6
40,173 + AZOBR_RS33535 0.75 -1.5
40,174 - AZOBR_RS33535 0.75 -4.4

Or see this region's nucleotide sequence