Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14535 and AZOBR_RS14540 are separated by 310 nucleotides AZOBR_RS14540 and AZOBR_RS14545 are separated by 37 nucleotides AZOBR_RS14545 and AZOBR_RS14550 are separated by 90 nucleotides
AZOBR_RS14535: AZOBR_RS14535 - RNA-binding protein, at 31,200 to 33,569
_RS14535
AZOBR_RS14540: AZOBR_RS14540 - hypothetical protein, at 33,880 to 34,761
_RS14540
AZOBR_RS14545: AZOBR_RS14545 - threonine transporter, at 34,799 to 35,434
_RS14545
AZOBR_RS14550: AZOBR_RS14550 - hypothetical protein, at 35,525 to 35,845
_RS14550
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 33.567 kb on + strand at 33.609 kb on + strand at 33.644 kb on - strand at 33.644 kb on - strand at 33.644 kb on - strand at 33.644 kb on - strand at 33.668 kb on - strand at 33.668 kb on - strand at 33.836 kb on + strand at 33.837 kb on - strand at 33.849 kb on - strand at 34.072 kb on + strand, within AZOBR_RS14540 at 34.072 kb on + strand, within AZOBR_RS14540 at 34.198 kb on + strand, within AZOBR_RS14540 at 34.198 kb on + strand, within AZOBR_RS14540 at 34.199 kb on - strand, within AZOBR_RS14540 at 34.199 kb on - strand, within AZOBR_RS14540 at 34.426 kb on + strand, within AZOBR_RS14540 at 34.679 kb on - strand at 34.893 kb on + strand, within AZOBR_RS14545 at 34.941 kb on + strand, within AZOBR_RS14545 at 34.942 kb on - strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.641 kb on - strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 33,567 + -0.4 33,609 + +0.8 33,644 - -0.0 33,644 - +0.6 33,644 - +0.3 33,644 - -0.3 33,668 - -0.9 33,668 - -0.5 33,836 + +0.3 33,837 - -0.6 33,849 - -1.7 34,072 + AZOBR_RS14540 0.22 -0.6 34,072 + AZOBR_RS14540 0.22 -0.1 34,198 + AZOBR_RS14540 0.36 -1.9 34,198 + AZOBR_RS14540 0.36 -0.3 34,199 - AZOBR_RS14540 0.36 -0.8 34,199 - AZOBR_RS14540 0.36 -0.4 34,426 + AZOBR_RS14540 0.62 -0.3 34,679 - -0.7 34,893 + AZOBR_RS14545 0.15 +0.5 34,941 + AZOBR_RS14545 0.22 +0.1 34,942 - AZOBR_RS14545 0.22 +0.2 35,184 + AZOBR_RS14545 0.61 -2.2 35,184 + AZOBR_RS14545 0.61 -0.1 35,184 + AZOBR_RS14545 0.61 +0.9 35,641 - AZOBR_RS14550 0.36 +0.3 35,739 + AZOBR_RS14550 0.67 -0.2 35,739 + AZOBR_RS14550 0.67 +0.2 35,739 + AZOBR_RS14550 0.67 +0.4
Or see this region's nucleotide sequence