Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02670 and AZOBR_RS02675 are separated by 58 nucleotides AZOBR_RS02675 and AZOBR_RS02680 are separated by 164 nucleotides AZOBR_RS02680 and AZOBR_RS02685 are separated by 177 nucleotides
AZOBR_RS02670: AZOBR_RS02670 - phosphoglucomutase, at 557,918 to 559,549
_RS02670
AZOBR_RS02675: AZOBR_RS02675 - carboxymethylenebutenolidase, at 559,608 to 560,294
_RS02675
AZOBR_RS02680: AZOBR_RS02680 - methionine sulfoxide reductase B, at 560,459 to 560,908
_RS02680
AZOBR_RS02685: AZOBR_RS02685 - alkane 1-monooxygenase, at 561,086 to 562,105
_RS02685
Position (kb) 560
561 Strain fitness (log2 ratio) -1
0
1 at 559.547 kb on + strand at 559.547 kb on + strand at 559.548 kb on - strand at 559.609 kb on + strand at 559.673 kb on - strand at 559.859 kb on - strand, within AZOBR_RS02675 at 559.859 kb on - strand, within AZOBR_RS02675 at 560.108 kb on - strand, within AZOBR_RS02675 at 560.218 kb on + strand, within AZOBR_RS02675 at 560.333 kb on + strand at 560.333 kb on + strand at 560.333 kb on + strand at 560.334 kb on - strand at 560.594 kb on + strand, within AZOBR_RS02680 at 560.594 kb on + strand, within AZOBR_RS02680 at 560.594 kb on + strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.681 kb on + strand, within AZOBR_RS02680 at 560.682 kb on - strand, within AZOBR_RS02680 at 560.720 kb on + strand, within AZOBR_RS02680 at 560.720 kb on + strand, within AZOBR_RS02680 at 560.721 kb on - strand, within AZOBR_RS02680 at 560.721 kb on - strand, within AZOBR_RS02680 at 560.721 kb on - strand, within AZOBR_RS02680 at 560.907 kb on - strand at 560.907 kb on - strand at 560.937 kb on + strand at 560.938 kb on - strand at 560.951 kb on + strand at 560.952 kb on - strand at 560.983 kb on + strand at 560.984 kb on - strand at 561.705 kb on - strand, within AZOBR_RS02685 at 561.747 kb on - strand, within AZOBR_RS02685 at 561.747 kb on - strand, within AZOBR_RS02685 at 561.747 kb on - strand, within AZOBR_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 559,547 + +0.3 559,547 + -0.1 559,548 - +0.3 559,609 + +1.6 559,673 - +0.2 559,859 - AZOBR_RS02675 0.37 -0.2 559,859 - AZOBR_RS02675 0.37 -0.4 560,108 - AZOBR_RS02675 0.73 -0.3 560,218 + AZOBR_RS02675 0.89 -0.9 560,333 + +0.1 560,333 + +1.2 560,333 + +0.5 560,334 - -0.2 560,594 + AZOBR_RS02680 0.30 -0.7 560,594 + AZOBR_RS02680 0.30 +1.5 560,594 + AZOBR_RS02680 0.30 +0.1 560,595 - AZOBR_RS02680 0.30 +0.1 560,595 - AZOBR_RS02680 0.30 +0.4 560,595 - AZOBR_RS02680 0.30 +0.8 560,595 - AZOBR_RS02680 0.30 +0.1 560,595 - AZOBR_RS02680 0.30 +0.5 560,681 + AZOBR_RS02680 0.49 +0.4 560,682 - AZOBR_RS02680 0.50 -1.1 560,720 + AZOBR_RS02680 0.58 +0.3 560,720 + AZOBR_RS02680 0.58 +0.1 560,721 - AZOBR_RS02680 0.58 +0.7 560,721 - AZOBR_RS02680 0.58 +0.5 560,721 - AZOBR_RS02680 0.58 -0.0 560,907 - +1.2 560,907 - +0.8 560,937 + -1.3 560,938 - -1.1 560,951 + +0.1 560,952 - +0.1 560,983 + +0.6 560,984 - +0.5 561,705 - AZOBR_RS02685 0.61 +0.1 561,747 - AZOBR_RS02685 0.65 +1.5 561,747 - AZOBR_RS02685 0.65 -0.3 561,747 - AZOBR_RS02685 0.65 -0.1
Or see this region's nucleotide sequence