Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14590 and ABZR86_RS14595 overlap by 4 nucleotides ABZR86_RS14595 and ABZR86_RS14600 are separated by 76 nucleotides ABZR86_RS14600 and ABZR86_RS14605 are separated by 1 nucleotides
ABZR86_RS14590: ABZR86_RS14590 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,265,164 to 3,266,177
_RS14590
ABZR86_RS14595: ABZR86_RS14595 - hypothetical protein, at 3,266,174 to 3,266,641
_RS14595
ABZR86_RS14600: ABZR86_RS14600 - conjugative transfer signal peptidase TraF, at 3,266,718 to 3,267,305
_RS14600
ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296
_RS14605
Position (kb)
3266
3267
3268 Strain fitness (log2 ratio)
-1
0
1 at 3265.816 kb on + strand, within ABZR86_RS14590 at 3266.094 kb on + strand at 3266.094 kb on + strand at 3266.524 kb on + strand, within ABZR86_RS14595 at 3266.524 kb on + strand, within ABZR86_RS14595 at 3266.524 kb on + strand, within ABZR86_RS14595 at 3266.616 kb on - strand at 3266.661 kb on + strand at 3266.662 kb on - strand at 3266.804 kb on - strand, within ABZR86_RS14600 at 3266.848 kb on - strand, within ABZR86_RS14600 at 3266.848 kb on - strand, within ABZR86_RS14600 at 3267.115 kb on + strand, within ABZR86_RS14600 at 3267.115 kb on + strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.116 kb on - strand, within ABZR86_RS14600 at 3267.178 kb on + strand, within ABZR86_RS14600 at 3267.178 kb on + strand, within ABZR86_RS14600 at 3267.179 kb on - strand, within ABZR86_RS14600 at 3267.398 kb on + strand at 3267.411 kb on + strand, within ABZR86_RS14605 at 3267.411 kb on + strand, within ABZR86_RS14605 at 3267.415 kb on + strand, within ABZR86_RS14605 at 3267.416 kb on - strand, within ABZR86_RS14605 at 3267.416 kb on - strand, within ABZR86_RS14605 at 3267.513 kb on + strand, within ABZR86_RS14605 at 3267.513 kb on + strand, within ABZR86_RS14605 at 3267.513 kb on + strand, within ABZR86_RS14605 at 3267.514 kb on - strand, within ABZR86_RS14605 at 3267.515 kb on + strand, within ABZR86_RS14605 at 3267.515 kb on + strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.516 kb on - strand, within ABZR86_RS14605 at 3267.668 kb on + strand, within ABZR86_RS14605 at 3267.668 kb on + strand, within ABZR86_RS14605 at 3267.668 kb on + strand, within ABZR86_RS14605 at 3267.845 kb on + strand, within ABZR86_RS14605 at 3267.872 kb on + strand, within ABZR86_RS14605 at 3267.872 kb on + strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.882 kb on - strand, within ABZR86_RS14605 at 3267.882 kb on - strand, within ABZR86_RS14605 at 3267.951 kb on - strand, within ABZR86_RS14605 at 3268.206 kb on + strand at 3268.206 kb on + strand at 3268.207 kb on - strand at 3268.208 kb on + strand at 3268.208 kb on + strand at 3268.209 kb on - strand at 3268.209 kb on - strand at 3268.236 kb on + strand at 3268.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 3,265,816 + ABZR86_RS14590 0.64 -0.2 3,266,094 + +0.9 3,266,094 + +0.1 3,266,524 + ABZR86_RS14595 0.75 +0.3 3,266,524 + ABZR86_RS14595 0.75 +0.1 3,266,524 + ABZR86_RS14595 0.75 +1.6 3,266,616 - -0.2 3,266,661 + +0.2 3,266,662 - -0.2 3,266,804 - ABZR86_RS14600 0.15 -0.5 3,266,848 - ABZR86_RS14600 0.22 -0.8 3,266,848 - ABZR86_RS14600 0.22 +0.1 3,267,115 + ABZR86_RS14600 0.68 -1.0 3,267,115 + ABZR86_RS14600 0.68 +0.6 3,267,116 - ABZR86_RS14600 0.68 -0.2 3,267,116 - ABZR86_RS14600 0.68 +0.1 3,267,116 - ABZR86_RS14600 0.68 -0.2 3,267,116 - ABZR86_RS14600 0.68 +0.3 3,267,178 + ABZR86_RS14600 0.78 +0.1 3,267,178 + ABZR86_RS14600 0.78 +0.6 3,267,179 - ABZR86_RS14600 0.78 -0.2 3,267,398 + -0.0 3,267,411 + ABZR86_RS14605 0.11 +0.1 3,267,411 + ABZR86_RS14605 0.11 +0.5 3,267,415 + ABZR86_RS14605 0.11 +0.2 3,267,416 - ABZR86_RS14605 0.11 +0.5 3,267,416 - ABZR86_RS14605 0.11 +0.0 3,267,513 + ABZR86_RS14605 0.21 -0.7 3,267,513 + ABZR86_RS14605 0.21 -0.5 3,267,513 + ABZR86_RS14605 0.21 +0.0 3,267,514 - ABZR86_RS14605 0.21 -0.0 3,267,515 + ABZR86_RS14605 0.21 +0.6 3,267,515 + ABZR86_RS14605 0.21 +0.3 3,267,516 - ABZR86_RS14605 0.21 -0.5 3,267,516 - ABZR86_RS14605 0.21 -0.1 3,267,516 - ABZR86_RS14605 0.21 -0.5 3,267,516 - ABZR86_RS14605 0.21 +0.8 3,267,668 + ABZR86_RS14605 0.36 -0.0 3,267,668 + ABZR86_RS14605 0.36 +0.0 3,267,668 + ABZR86_RS14605 0.36 -0.4 3,267,845 + ABZR86_RS14605 0.54 +0.1 3,267,872 + ABZR86_RS14605 0.57 -0.1 3,267,872 + ABZR86_RS14605 0.57 +0.2 3,267,873 - ABZR86_RS14605 0.57 +0.3 3,267,873 - ABZR86_RS14605 0.57 +0.0 3,267,873 - ABZR86_RS14605 0.57 -1.0 3,267,873 - ABZR86_RS14605 0.57 +0.0 3,267,882 - ABZR86_RS14605 0.58 +0.5 3,267,882 - ABZR86_RS14605 0.58 +0.1 3,267,951 - ABZR86_RS14605 0.65 -0.2 3,268,206 + -0.0 3,268,206 + +0.1 3,268,207 - -0.9 3,268,208 + -0.4 3,268,208 + +0.4 3,268,209 - -0.1 3,268,209 - +0.0 3,268,236 + +0.6 3,268,277 - -0.1
Or see this region's nucleotide sequence