Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14600

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14590 and ABZR86_RS14595 overlap by 4 nucleotidesABZR86_RS14595 and ABZR86_RS14600 are separated by 76 nucleotidesABZR86_RS14600 and ABZR86_RS14605 are separated by 1 nucleotides ABZR86_RS14590: ABZR86_RS14590 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,265,164 to 3,266,177 _RS14590 ABZR86_RS14595: ABZR86_RS14595 - hypothetical protein, at 3,266,174 to 3,266,641 _RS14595 ABZR86_RS14600: ABZR86_RS14600 - conjugative transfer signal peptidase TraF, at 3,266,718 to 3,267,305 _RS14600 ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296 _RS14605 Position (kb) 3266 3267 3268Strain fitness (log2 ratio) -1 0 1at 3265.816 kb on + strand, within ABZR86_RS14590at 3266.094 kb on + strandat 3266.094 kb on + strandat 3266.524 kb on + strand, within ABZR86_RS14595at 3266.524 kb on + strand, within ABZR86_RS14595at 3266.524 kb on + strand, within ABZR86_RS14595at 3266.616 kb on - strandat 3266.661 kb on + strandat 3266.662 kb on - strandat 3266.804 kb on - strand, within ABZR86_RS14600at 3266.848 kb on - strand, within ABZR86_RS14600at 3266.848 kb on - strand, within ABZR86_RS14600at 3267.115 kb on + strand, within ABZR86_RS14600at 3267.115 kb on + strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.178 kb on + strand, within ABZR86_RS14600at 3267.178 kb on + strand, within ABZR86_RS14600at 3267.179 kb on - strand, within ABZR86_RS14600at 3267.398 kb on + strandat 3267.411 kb on + strand, within ABZR86_RS14605at 3267.411 kb on + strand, within ABZR86_RS14605at 3267.415 kb on + strand, within ABZR86_RS14605at 3267.416 kb on - strand, within ABZR86_RS14605at 3267.416 kb on - strand, within ABZR86_RS14605at 3267.513 kb on + strand, within ABZR86_RS14605at 3267.513 kb on + strand, within ABZR86_RS14605at 3267.513 kb on + strand, within ABZR86_RS14605at 3267.514 kb on - strand, within ABZR86_RS14605at 3267.515 kb on + strand, within ABZR86_RS14605at 3267.515 kb on + strand, within ABZR86_RS14605at 3267.516 kb on - strand, within ABZR86_RS14605at 3267.516 kb on - strand, within ABZR86_RS14605at 3267.516 kb on - strand, within ABZR86_RS14605at 3267.516 kb on - strand, within ABZR86_RS14605at 3267.668 kb on + strand, within ABZR86_RS14605at 3267.668 kb on + strand, within ABZR86_RS14605at 3267.668 kb on + strand, within ABZR86_RS14605at 3267.845 kb on + strand, within ABZR86_RS14605at 3267.872 kb on + strand, within ABZR86_RS14605at 3267.872 kb on + strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.882 kb on - strand, within ABZR86_RS14605at 3267.882 kb on - strand, within ABZR86_RS14605at 3267.951 kb on - strand, within ABZR86_RS14605at 3268.206 kb on + strandat 3268.206 kb on + strandat 3268.207 kb on - strandat 3268.208 kb on + strandat 3268.208 kb on + strandat 3268.209 kb on - strandat 3268.209 kb on - strandat 3268.236 kb on + strandat 3268.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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3,265,816 + ABZR86_RS14590 0.64 -0.2
3,266,094 + +0.9
3,266,094 + +0.1
3,266,524 + ABZR86_RS14595 0.75 +0.3
3,266,524 + ABZR86_RS14595 0.75 +0.1
3,266,524 + ABZR86_RS14595 0.75 +1.6
3,266,616 - -0.2
3,266,661 + +0.2
3,266,662 - -0.2
3,266,804 - ABZR86_RS14600 0.15 -0.5
3,266,848 - ABZR86_RS14600 0.22 -0.8
3,266,848 - ABZR86_RS14600 0.22 +0.1
3,267,115 + ABZR86_RS14600 0.68 -1.0
3,267,115 + ABZR86_RS14600 0.68 +0.6
3,267,116 - ABZR86_RS14600 0.68 -0.2
3,267,116 - ABZR86_RS14600 0.68 +0.1
3,267,116 - ABZR86_RS14600 0.68 -0.2
3,267,116 - ABZR86_RS14600 0.68 +0.3
3,267,178 + ABZR86_RS14600 0.78 +0.1
3,267,178 + ABZR86_RS14600 0.78 +0.6
3,267,179 - ABZR86_RS14600 0.78 -0.2
3,267,398 + -0.0
3,267,411 + ABZR86_RS14605 0.11 +0.1
3,267,411 + ABZR86_RS14605 0.11 +0.5
3,267,415 + ABZR86_RS14605 0.11 +0.2
3,267,416 - ABZR86_RS14605 0.11 +0.5
3,267,416 - ABZR86_RS14605 0.11 +0.0
3,267,513 + ABZR86_RS14605 0.21 -0.7
3,267,513 + ABZR86_RS14605 0.21 -0.5
3,267,513 + ABZR86_RS14605 0.21 +0.0
3,267,514 - ABZR86_RS14605 0.21 -0.0
3,267,515 + ABZR86_RS14605 0.21 +0.6
3,267,515 + ABZR86_RS14605 0.21 +0.3
3,267,516 - ABZR86_RS14605 0.21 -0.5
3,267,516 - ABZR86_RS14605 0.21 -0.1
3,267,516 - ABZR86_RS14605 0.21 -0.5
3,267,516 - ABZR86_RS14605 0.21 +0.8
3,267,668 + ABZR86_RS14605 0.36 -0.0
3,267,668 + ABZR86_RS14605 0.36 +0.0
3,267,668 + ABZR86_RS14605 0.36 -0.4
3,267,845 + ABZR86_RS14605 0.54 +0.1
3,267,872 + ABZR86_RS14605 0.57 -0.1
3,267,872 + ABZR86_RS14605 0.57 +0.2
3,267,873 - ABZR86_RS14605 0.57 +0.3
3,267,873 - ABZR86_RS14605 0.57 +0.0
3,267,873 - ABZR86_RS14605 0.57 -1.0
3,267,873 - ABZR86_RS14605 0.57 +0.0
3,267,882 - ABZR86_RS14605 0.58 +0.5
3,267,882 - ABZR86_RS14605 0.58 +0.1
3,267,951 - ABZR86_RS14605 0.65 -0.2
3,268,206 + -0.0
3,268,206 + +0.1
3,268,207 - -0.9
3,268,208 + -0.4
3,268,208 + +0.4
3,268,209 - -0.1
3,268,209 - +0.0
3,268,236 + +0.6
3,268,277 - -0.1

Or see this region's nucleotide sequence