Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14290

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14280 and ABZR86_RS14285 are separated by 205 nucleotidesABZR86_RS14285 and ABZR86_RS14290 are separated by 94 nucleotidesABZR86_RS14290 and ABZR86_RS14295 are separated by 56 nucleotides ABZR86_RS14280: ABZR86_RS14280 - methyltransferase, at 3,178,011 to 3,179,057 _RS14280 ABZR86_RS14285: ABZR86_RS14285 - antibiotic biosynthesis monooxygenase, at 3,179,263 to 3,179,592 _RS14285 ABZR86_RS14290: ABZR86_RS14290 - FAD-dependent monooxygenase, at 3,179,687 to 3,180,913 _RS14290 ABZR86_RS14295: ABZR86_RS14295 - NAD(P)/FAD-dependent oxidoreductase, at 3,180,970 to 3,182,637 _RS14295 Position (kb) 3179 3180 3181Strain fitness (log2 ratio) -2 -1 0 1at 3179.152 kb on - strandat 3179.456 kb on - strand, within ABZR86_RS14285at 3179.458 kb on - strand, within ABZR86_RS14285at 3180.038 kb on + strand, within ABZR86_RS14290at 3180.039 kb on - strand, within ABZR86_RS14290at 3180.353 kb on + strand, within ABZR86_RS14290at 3180.641 kb on + strand, within ABZR86_RS14290at 3180.642 kb on - strand, within ABZR86_RS14290at 3180.642 kb on - strand, within ABZR86_RS14290at 3180.912 kb on - strandat 3180.963 kb on + strandat 3180.963 kb on + strandat 3180.964 kb on - strandat 3181.033 kb on + strandat 3181.034 kb on - strandat 3181.156 kb on + strand, within ABZR86_RS14295at 3181.156 kb on + strand, within ABZR86_RS14295at 3181.157 kb on - strand, within ABZR86_RS14295at 3181.157 kb on - strand, within ABZR86_RS14295at 3181.168 kb on + strand, within ABZR86_RS14295at 3181.216 kb on + strand, within ABZR86_RS14295at 3181.216 kb on + strand, within ABZR86_RS14295at 3181.216 kb on + strand, within ABZR86_RS14295at 3181.216 kb on + strand, within ABZR86_RS14295at 3181.217 kb on - strand, within ABZR86_RS14295at 3181.243 kb on + strand, within ABZR86_RS14295at 3181.606 kb on + strand, within ABZR86_RS14295at 3181.606 kb on + strand, within ABZR86_RS14295

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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3,179,152 - +0.5
3,179,456 - ABZR86_RS14285 0.58 +0.8
3,179,458 - ABZR86_RS14285 0.59 -0.0
3,180,038 + ABZR86_RS14290 0.29 -0.5
3,180,039 - ABZR86_RS14290 0.29 +0.4
3,180,353 + ABZR86_RS14290 0.54 +0.7
3,180,641 + ABZR86_RS14290 0.78 -2.3
3,180,642 - ABZR86_RS14290 0.78 -0.1
3,180,642 - ABZR86_RS14290 0.78 -0.2
3,180,912 - -1.8
3,180,963 + +0.0
3,180,963 + -0.6
3,180,964 - -0.6
3,181,033 + -0.3
3,181,034 - +1.1
3,181,156 + ABZR86_RS14295 0.11 -0.1
3,181,156 + ABZR86_RS14295 0.11 +0.2
3,181,157 - ABZR86_RS14295 0.11 +0.2
3,181,157 - ABZR86_RS14295 0.11 +0.4
3,181,168 + ABZR86_RS14295 0.12 -0.1
3,181,216 + ABZR86_RS14295 0.15 +0.3
3,181,216 + ABZR86_RS14295 0.15 +0.3
3,181,216 + ABZR86_RS14295 0.15 +0.1
3,181,216 + ABZR86_RS14295 0.15 +0.5
3,181,217 - ABZR86_RS14295 0.15 +0.4
3,181,243 + ABZR86_RS14295 0.16 -0.4
3,181,606 + ABZR86_RS14295 0.38 +0.8
3,181,606 + ABZR86_RS14295 0.38 +1.5

Or see this region's nucleotide sequence