Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10995

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10990 and ABZR86_RS10995 are separated by 56 nucleotidesABZR86_RS10995 and ABZR86_RS11000 are separated by 6 nucleotidesABZR86_RS11000 and ABZR86_RS11005 overlap by 4 nucleotides ABZR86_RS10990: ABZR86_RS10990 - LysR family transcriptional regulator ArgP, at 2,441,389 to 2,442,291 _RS10990 ABZR86_RS10995: ABZR86_RS10995 - hypothetical protein, at 2,442,348 to 2,442,596 _RS10995 ABZR86_RS11000: ABZR86_RS11000 - spore coat U domain-containing protein, at 2,442,603 to 2,443,556 _RS11000 ABZR86_RS11005: ABZR86_RS11005 - fimbria/pilus outer membrane usher protein, at 2,443,553 to 2,445,919 _RS11005 Position (kb) 2442 2443Strain fitness (log2 ratio) -1 0 1at 2442.052 kb on + strand, within ABZR86_RS10990at 2442.052 kb on + strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.053 kb on - strand, within ABZR86_RS10990at 2442.289 kb on + strandat 2442.316 kb on - strandat 2442.351 kb on + strandat 2442.351 kb on + strandat 2442.352 kb on - strandat 2442.352 kb on - strandat 2442.513 kb on + strand, within ABZR86_RS10995at 2442.577 kb on - strandat 2442.637 kb on + strandat 2442.637 kb on + strandat 2442.638 kb on - strandat 2442.638 kb on - strandat 2442.638 kb on - strandat 2442.778 kb on + strand, within ABZR86_RS11000at 2442.778 kb on + strand, within ABZR86_RS11000at 2442.779 kb on - strand, within ABZR86_RS11000at 2442.779 kb on - strand, within ABZR86_RS11000at 2442.888 kb on - strand, within ABZR86_RS11000at 2442.888 kb on - strand, within ABZR86_RS11000at 2443.060 kb on + strand, within ABZR86_RS11000at 2443.060 kb on + strand, within ABZR86_RS11000at 2443.060 kb on + strand, within ABZR86_RS11000at 2443.061 kb on - strand, within ABZR86_RS11000at 2443.061 kb on - strand, within ABZR86_RS11000at 2443.061 kb on - strand, within ABZR86_RS11000at 2443.063 kb on + strand, within ABZR86_RS11000at 2443.063 kb on + strand, within ABZR86_RS11000at 2443.063 kb on + strand, within ABZR86_RS11000at 2443.063 kb on + strand, within ABZR86_RS11000at 2443.064 kb on - strand, within ABZR86_RS11000at 2443.064 kb on - strand, within ABZR86_RS11000at 2443.064 kb on - strand, within ABZR86_RS11000at 2443.069 kb on + strand, within ABZR86_RS11000at 2443.105 kb on + strand, within ABZR86_RS11000at 2443.106 kb on - strand, within ABZR86_RS11000at 2443.291 kb on + strand, within ABZR86_RS11000at 2443.291 kb on + strand, within ABZR86_RS11000at 2443.291 kb on + strand, within ABZR86_RS11000at 2443.291 kb on + strand, within ABZR86_RS11000at 2443.291 kb on + strand, within ABZR86_RS11000at 2443.292 kb on - strand, within ABZR86_RS11000at 2443.346 kb on + strand, within ABZR86_RS11000at 2443.407 kb on - strand, within ABZR86_RS11000at 2443.407 kb on - strand, within ABZR86_RS11000at 2443.407 kb on - strand, within ABZR86_RS11000

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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2,442,052 + ABZR86_RS10990 0.73 +0.6
2,442,052 + ABZR86_RS10990 0.73 +0.5
2,442,053 - ABZR86_RS10990 0.74 +0.8
2,442,053 - ABZR86_RS10990 0.74 +0.8
2,442,053 - ABZR86_RS10990 0.74 +0.3
2,442,053 - ABZR86_RS10990 0.74 +0.0
2,442,053 - ABZR86_RS10990 0.74 -0.2
2,442,053 - ABZR86_RS10990 0.74 -0.5
2,442,053 - ABZR86_RS10990 0.74 -0.7
2,442,289 + +0.2
2,442,316 - -0.2
2,442,351 + -0.2
2,442,351 + +0.1
2,442,352 - +1.2
2,442,352 - +0.1
2,442,513 + ABZR86_RS10995 0.66 -0.0
2,442,577 - -1.0
2,442,637 + -1.4
2,442,637 + +0.1
2,442,638 - -0.2
2,442,638 - +0.0
2,442,638 - +0.4
2,442,778 + ABZR86_RS11000 0.18 -0.2
2,442,778 + ABZR86_RS11000 0.18 +0.6
2,442,779 - ABZR86_RS11000 0.18 +0.3
2,442,779 - ABZR86_RS11000 0.18 +0.4
2,442,888 - ABZR86_RS11000 0.30 +0.5
2,442,888 - ABZR86_RS11000 0.30 -0.2
2,443,060 + ABZR86_RS11000 0.48 +0.2
2,443,060 + ABZR86_RS11000 0.48 -0.1
2,443,060 + ABZR86_RS11000 0.48 +0.0
2,443,061 - ABZR86_RS11000 0.48 -0.0
2,443,061 - ABZR86_RS11000 0.48 -1.6
2,443,061 - ABZR86_RS11000 0.48 -0.1
2,443,063 + ABZR86_RS11000 0.48 +0.3
2,443,063 + ABZR86_RS11000 0.48 +0.4
2,443,063 + ABZR86_RS11000 0.48 -0.6
2,443,063 + ABZR86_RS11000 0.48 +0.2
2,443,064 - ABZR86_RS11000 0.48 -0.3
2,443,064 - ABZR86_RS11000 0.48 -0.4
2,443,064 - ABZR86_RS11000 0.48 -0.5
2,443,069 + ABZR86_RS11000 0.49 -0.1
2,443,105 + ABZR86_RS11000 0.53 -1.2
2,443,106 - ABZR86_RS11000 0.53 -0.4
2,443,291 + ABZR86_RS11000 0.72 -0.0
2,443,291 + ABZR86_RS11000 0.72 -0.4
2,443,291 + ABZR86_RS11000 0.72 -0.2
2,443,291 + ABZR86_RS11000 0.72 -0.4
2,443,291 + ABZR86_RS11000 0.72 +0.6
2,443,292 - ABZR86_RS11000 0.72 -0.6
2,443,346 + ABZR86_RS11000 0.78 +0.1
2,443,407 - ABZR86_RS11000 0.84 +0.6
2,443,407 - ABZR86_RS11000 0.84 -1.0
2,443,407 - ABZR86_RS11000 0.84 -0.0

Or see this region's nucleotide sequence