Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06410

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06400 and ABZR86_RS06405 are separated by 108 nucleotidesABZR86_RS06405 and ABZR86_RS06410 are separated by 71 nucleotidesABZR86_RS06410 and ABZR86_RS06415 overlap by 8 nucleotidesABZR86_RS06415 and ABZR86_RS06420 overlap by 4 nucleotides ABZR86_RS06400: ABZR86_RS06400 - polyhydroxyalkanoate synthesis repressor PhaR, at 1,424,401 to 1,424,886 _RS06400 ABZR86_RS06405: ABZR86_RS06405 - acetoacetyl-CoA reductase, at 1,424,995 to 1,425,738 _RS06405 ABZR86_RS06410: ABZR86_RS06410 - NAD(P)/FAD-dependent oxidoreductase, at 1,425,810 to 1,427,222 _RS06410 ABZR86_RS06415: ABZR86_RS06415 - DUF3293 domain-containing protein, at 1,427,215 to 1,427,670 _RS06415 ABZR86_RS06420: ABZR86_RS06420 - cytochrome c biogenesis heme-transporting ATPase CcmA, at 1,427,667 to 1,428,302 _RS06420 Position (kb) 1425 1426 1427 1428Strain fitness (log2 ratio) -2 -1 0 1 2at 1424.884 kb on + strandat 1424.884 kb on + strandat 1424.885 kb on - strandat 1424.885 kb on - strandat 1424.885 kb on - strandat 1424.885 kb on - strandat 1425.003 kb on + strandat 1425.004 kb on - strandat 1425.004 kb on - strandat 1425.015 kb on + strandat 1425.451 kb on + strand, within ABZR86_RS06405at 1425.451 kb on + strand, within ABZR86_RS06405at 1425.451 kb on + strand, within ABZR86_RS06405at 1425.451 kb on + strand, within ABZR86_RS06405at 1425.452 kb on - strand, within ABZR86_RS06405at 1425.452 kb on - strand, within ABZR86_RS06405at 1425.547 kb on + strand, within ABZR86_RS06405at 1425.547 kb on + strand, within ABZR86_RS06405at 1425.548 kb on - strand, within ABZR86_RS06405at 1425.555 kb on + strand, within ABZR86_RS06405at 1425.685 kb on + strandat 1425.686 kb on - strandat 1425.722 kb on - strandat 1425.722 kb on - strandat 1425.777 kb on + strandat 1426.098 kb on + strand, within ABZR86_RS06410at 1426.099 kb on - strand, within ABZR86_RS06410at 1426.341 kb on + strand, within ABZR86_RS06410at 1426.383 kb on + strand, within ABZR86_RS06410at 1426.384 kb on - strand, within ABZR86_RS06410at 1426.384 kb on - strand, within ABZR86_RS06410at 1426.484 kb on + strand, within ABZR86_RS06410at 1426.484 kb on + strand, within ABZR86_RS06410at 1426.484 kb on + strand, within ABZR86_RS06410at 1426.484 kb on + strand, within ABZR86_RS06410at 1426.484 kb on + strand, within ABZR86_RS06410at 1426.485 kb on - strand, within ABZR86_RS06410at 1426.503 kb on + strand, within ABZR86_RS06410at 1426.503 kb on + strand, within ABZR86_RS06410at 1426.504 kb on - strand, within ABZR86_RS06410at 1426.504 kb on - strand, within ABZR86_RS06410at 1426.677 kb on + strand, within ABZR86_RS06410at 1426.678 kb on - strand, within ABZR86_RS06410at 1426.713 kb on + strand, within ABZR86_RS06410at 1426.713 kb on + strand, within ABZR86_RS06410at 1426.714 kb on - strand, within ABZR86_RS06410at 1426.730 kb on + strand, within ABZR86_RS06410at 1426.731 kb on - strand, within ABZR86_RS06410at 1426.938 kb on + strand, within ABZR86_RS06410at 1426.938 kb on + strand, within ABZR86_RS06410at 1426.938 kb on + strand, within ABZR86_RS06410at 1426.938 kb on + strand, within ABZR86_RS06410at 1426.938 kb on + strand, within ABZR86_RS06410at 1426.939 kb on - strand, within ABZR86_RS06410at 1426.939 kb on - strand, within ABZR86_RS06410at 1426.939 kb on - strand, within ABZR86_RS06410at 1426.939 kb on - strand, within ABZR86_RS06410at 1426.939 kb on - strand, within ABZR86_RS06410at 1426.974 kb on + strand, within ABZR86_RS06410at 1426.975 kb on - strand, within ABZR86_RS06410at 1426.975 kb on - strand, within ABZR86_RS06410at 1427.070 kb on + strand, within ABZR86_RS06410at 1427.071 kb on - strand, within ABZR86_RS06410at 1427.076 kb on + strand, within ABZR86_RS06410at 1427.076 kb on + strand, within ABZR86_RS06410at 1427.076 kb on + strand, within ABZR86_RS06410at 1427.077 kb on - strand, within ABZR86_RS06410at 1427.077 kb on - strand, within ABZR86_RS06410at 1427.077 kb on - strand, within ABZR86_RS06410at 1427.083 kb on - strandat 1427.083 kb on - strandat 1427.239 kb on + strandat 1427.584 kb on + strand, within ABZR86_RS06415at 1427.584 kb on + strand, within ABZR86_RS06415at 1427.584 kb on + strand, within ABZR86_RS06415at 1427.584 kb on + strand, within ABZR86_RS06415at 1427.584 kb on + strand, within ABZR86_RS06415at 1427.584 kb on + strand, within ABZR86_RS06415at 1427.585 kb on - strand, within ABZR86_RS06415at 1427.585 kb on - strand, within ABZR86_RS06415at 1427.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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1,424,884 + -1.1
1,424,884 + -0.5
1,424,885 - +0.3
1,424,885 - +0.2
1,424,885 - +0.3
1,424,885 - -0.8
1,425,003 + -0.2
1,425,004 - +0.2
1,425,004 - +0.0
1,425,015 + +0.4
1,425,451 + ABZR86_RS06405 0.61 +0.6
1,425,451 + ABZR86_RS06405 0.61 -0.6
1,425,451 + ABZR86_RS06405 0.61 +0.2
1,425,451 + ABZR86_RS06405 0.61 +0.3
1,425,452 - ABZR86_RS06405 0.61 -0.8
1,425,452 - ABZR86_RS06405 0.61 +0.5
1,425,547 + ABZR86_RS06405 0.74 +0.3
1,425,547 + ABZR86_RS06405 0.74 -0.4
1,425,548 - ABZR86_RS06405 0.74 -0.5
1,425,555 + ABZR86_RS06405 0.75 +1.7
1,425,685 + +0.5
1,425,686 - -0.9
1,425,722 - +0.6
1,425,722 - +0.1
1,425,777 + -0.2
1,426,098 + ABZR86_RS06410 0.20 +0.4
1,426,099 - ABZR86_RS06410 0.20 +0.9
1,426,341 + ABZR86_RS06410 0.38 +0.5
1,426,383 + ABZR86_RS06410 0.41 -0.3
1,426,384 - ABZR86_RS06410 0.41 +0.2
1,426,384 - ABZR86_RS06410 0.41 -0.4
1,426,484 + ABZR86_RS06410 0.48 -0.5
1,426,484 + ABZR86_RS06410 0.48 -1.3
1,426,484 + ABZR86_RS06410 0.48 -0.1
1,426,484 + ABZR86_RS06410 0.48 -1.8
1,426,484 + ABZR86_RS06410 0.48 -0.9
1,426,485 - ABZR86_RS06410 0.48 +0.6
1,426,503 + ABZR86_RS06410 0.49 +0.6
1,426,503 + ABZR86_RS06410 0.49 +0.5
1,426,504 - ABZR86_RS06410 0.49 +0.5
1,426,504 - ABZR86_RS06410 0.49 -0.8
1,426,677 + ABZR86_RS06410 0.61 +0.1
1,426,678 - ABZR86_RS06410 0.61 -0.1
1,426,713 + ABZR86_RS06410 0.64 -0.4
1,426,713 + ABZR86_RS06410 0.64 +0.8
1,426,714 - ABZR86_RS06410 0.64 -1.8
1,426,730 + ABZR86_RS06410 0.65 -0.6
1,426,731 - ABZR86_RS06410 0.65 +1.3
1,426,938 + ABZR86_RS06410 0.80 -0.4
1,426,938 + ABZR86_RS06410 0.80 +0.6
1,426,938 + ABZR86_RS06410 0.80 -0.8
1,426,938 + ABZR86_RS06410 0.80 +1.2
1,426,938 + ABZR86_RS06410 0.80 -0.4
1,426,939 - ABZR86_RS06410 0.80 -0.2
1,426,939 - ABZR86_RS06410 0.80 +0.3
1,426,939 - ABZR86_RS06410 0.80 -1.1
1,426,939 - ABZR86_RS06410 0.80 -0.3
1,426,939 - ABZR86_RS06410 0.80 -1.7
1,426,974 + ABZR86_RS06410 0.82 +0.5
1,426,975 - ABZR86_RS06410 0.82 -0.0
1,426,975 - ABZR86_RS06410 0.82 +0.5
1,427,070 + ABZR86_RS06410 0.89 -0.0
1,427,071 - ABZR86_RS06410 0.89 -0.5
1,427,076 + ABZR86_RS06410 0.90 +0.7
1,427,076 + ABZR86_RS06410 0.90 -0.4
1,427,076 + ABZR86_RS06410 0.90 -2.0
1,427,077 - ABZR86_RS06410 0.90 +0.1
1,427,077 - ABZR86_RS06410 0.90 -0.4
1,427,077 - ABZR86_RS06410 0.90 -0.3
1,427,083 - +0.3
1,427,083 - +1.9
1,427,239 + -0.3
1,427,584 + ABZR86_RS06415 0.81 -0.3
1,427,584 + ABZR86_RS06415 0.81 +0.7
1,427,584 + ABZR86_RS06415 0.81 +0.6
1,427,584 + ABZR86_RS06415 0.81 +0.1
1,427,584 + ABZR86_RS06415 0.81 -0.6
1,427,584 + ABZR86_RS06415 0.81 -0.6
1,427,585 - ABZR86_RS06415 0.81 -0.3
1,427,585 - ABZR86_RS06415 0.81 +0.4
1,427,640 + +0.3

Or see this region's nucleotide sequence