Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04710

Experiment: Cisplatin 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS04700 and ABZR86_RS04705 are separated by 12 nucleotidesABZR86_RS04705 and ABZR86_RS04710 overlap by 4 nucleotidesABZR86_RS04710 and ABZR86_RS04715 are separated by 40 nucleotides ABZR86_RS04700: ABZR86_RS04700 - radical SAM protein, at 1,053,750 to 1,055,249 _RS04700 ABZR86_RS04705: ABZR86_RS04705 - class I SAM-dependent methyltransferase, at 1,055,262 to 1,055,957 _RS04705 ABZR86_RS04710: ABZR86_RS04710 - amidohydrolase family protein, at 1,055,954 to 1,057,111 _RS04710 ABZR86_RS04715: ABZR86_RS04715 - class I SAM-dependent methyltransferase, at 1,057,152 to 1,058,012 _RS04715 Position (kb) 1055 1056 1057 1058Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1054.960 kb on + strand, within ABZR86_RS04700at 1054.961 kb on - strand, within ABZR86_RS04700at 1055.099 kb on + strand, within ABZR86_RS04700at 1055.099 kb on + strand, within ABZR86_RS04700at 1055.419 kb on + strand, within ABZR86_RS04705at 1055.420 kb on - strand, within ABZR86_RS04705at 1055.420 kb on - strand, within ABZR86_RS04705at 1055.420 kb on - strand, within ABZR86_RS04705at 1055.433 kb on - strand, within ABZR86_RS04705at 1055.446 kb on + strand, within ABZR86_RS04705at 1055.447 kb on - strand, within ABZR86_RS04705at 1055.581 kb on + strand, within ABZR86_RS04705at 1055.704 kb on + strand, within ABZR86_RS04705at 1056.301 kb on - strand, within ABZR86_RS04710at 1056.301 kb on - strand, within ABZR86_RS04710at 1056.717 kb on + strand, within ABZR86_RS04710at 1056.718 kb on - strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.924 kb on + strand, within ABZR86_RS04710at 1056.925 kb on - strand, within ABZR86_RS04710at 1056.925 kb on - strand, within ABZR86_RS04710at 1056.925 kb on - strand, within ABZR86_RS04710at 1056.925 kb on - strand, within ABZR86_RS04710at 1056.925 kb on - strand, within ABZR86_RS04710at 1057.010 kb on + strandat 1057.010 kb on + strandat 1057.011 kb on - strandat 1057.282 kb on + strand, within ABZR86_RS04715at 1057.283 kb on - strand, within ABZR86_RS04715at 1057.352 kb on - strand, within ABZR86_RS04715at 1057.370 kb on - strand, within ABZR86_RS04715at 1057.370 kb on - strand, within ABZR86_RS04715at 1057.372 kb on + strand, within ABZR86_RS04715at 1057.372 kb on + strand, within ABZR86_RS04715at 1057.372 kb on + strand, within ABZR86_RS04715at 1057.373 kb on - strand, within ABZR86_RS04715at 1057.386 kb on - strand, within ABZR86_RS04715at 1057.465 kb on + strand, within ABZR86_RS04715at 1057.600 kb on + strand, within ABZR86_RS04715at 1057.600 kb on + strand, within ABZR86_RS04715at 1057.600 kb on + strand, within ABZR86_RS04715at 1057.601 kb on - strand, within ABZR86_RS04715at 1057.601 kb on - strand, within ABZR86_RS04715at 1057.601 kb on - strand, within ABZR86_RS04715at 1057.601 kb on - strand, within ABZR86_RS04715at 1057.601 kb on - strand, within ABZR86_RS04715at 1057.601 kb on - strand, within ABZR86_RS04715at 1057.674 kb on - strand, within ABZR86_RS04715at 1057.674 kb on - strand, within ABZR86_RS04715at 1057.921 kb on + strand, within ABZR86_RS04715at 1057.921 kb on + strand, within ABZR86_RS04715at 1057.922 kb on - strand, within ABZR86_RS04715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
remove
1,054,960 + ABZR86_RS04700 0.81 +0.4
1,054,961 - ABZR86_RS04700 0.81 +0.5
1,055,099 + ABZR86_RS04700 0.90 -0.6
1,055,099 + ABZR86_RS04700 0.90 +0.1
1,055,419 + ABZR86_RS04705 0.23 +0.4
1,055,420 - ABZR86_RS04705 0.23 +0.2
1,055,420 - ABZR86_RS04705 0.23 +0.1
1,055,420 - ABZR86_RS04705 0.23 -0.1
1,055,433 - ABZR86_RS04705 0.25 +1.9
1,055,446 + ABZR86_RS04705 0.26 +0.1
1,055,447 - ABZR86_RS04705 0.27 +0.3
1,055,581 + ABZR86_RS04705 0.46 +0.9
1,055,704 + ABZR86_RS04705 0.64 -0.2
1,056,301 - ABZR86_RS04710 0.30 +0.1
1,056,301 - ABZR86_RS04710 0.30 -0.1
1,056,717 + ABZR86_RS04710 0.66 -0.2
1,056,718 - ABZR86_RS04710 0.66 +0.5
1,056,924 + ABZR86_RS04710 0.84 -0.3
1,056,924 + ABZR86_RS04710 0.84 -0.3
1,056,924 + ABZR86_RS04710 0.84 +0.2
1,056,924 + ABZR86_RS04710 0.84 +0.5
1,056,924 + ABZR86_RS04710 0.84 +0.3
1,056,924 + ABZR86_RS04710 0.84 -0.8
1,056,924 + ABZR86_RS04710 0.84 -0.1
1,056,924 + ABZR86_RS04710 0.84 -0.1
1,056,924 + ABZR86_RS04710 0.84 +0.2
1,056,924 + ABZR86_RS04710 0.84 -0.3
1,056,925 - ABZR86_RS04710 0.84 +0.2
1,056,925 - ABZR86_RS04710 0.84 +0.7
1,056,925 - ABZR86_RS04710 0.84 +0.1
1,056,925 - ABZR86_RS04710 0.84 +0.9
1,056,925 - ABZR86_RS04710 0.84 +0.4
1,057,010 + +0.5
1,057,010 + -0.1
1,057,011 - -0.7
1,057,282 + ABZR86_RS04715 0.15 +0.2
1,057,283 - ABZR86_RS04715 0.15 -0.3
1,057,352 - ABZR86_RS04715 0.23 +0.2
1,057,370 - ABZR86_RS04715 0.25 +0.1
1,057,370 - ABZR86_RS04715 0.25 +0.4
1,057,372 + ABZR86_RS04715 0.26 -2.5
1,057,372 + ABZR86_RS04715 0.26 +0.8
1,057,372 + ABZR86_RS04715 0.26 +0.1
1,057,373 - ABZR86_RS04715 0.26 -0.6
1,057,386 - ABZR86_RS04715 0.27 +0.1
1,057,465 + ABZR86_RS04715 0.36 -0.4
1,057,600 + ABZR86_RS04715 0.52 +0.6
1,057,600 + ABZR86_RS04715 0.52 +0.7
1,057,600 + ABZR86_RS04715 0.52 -0.3
1,057,601 - ABZR86_RS04715 0.52 -0.2
1,057,601 - ABZR86_RS04715 0.52 -0.9
1,057,601 - ABZR86_RS04715 0.52 -0.1
1,057,601 - ABZR86_RS04715 0.52 +0.1
1,057,601 - ABZR86_RS04715 0.52 -1.2
1,057,601 - ABZR86_RS04715 0.52 +0.8
1,057,674 - ABZR86_RS04715 0.61 -0.4
1,057,674 - ABZR86_RS04715 0.61 +0.3
1,057,921 + ABZR86_RS04715 0.89 +0.0
1,057,921 + ABZR86_RS04715 0.89 +3.0
1,057,922 - ABZR86_RS04715 0.89 -0.4

Or see this region's nucleotide sequence