Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3144

Experiment: MoYLS4 with Aluminum chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3143 and DvMF_3144 are separated by 131 nucleotidesDvMF_3144 and DvMF_3145 are separated by 323 nucleotides DvMF_3143: DvMF_3143 - glycosyl transferase family 2 (RefSeq), at 3,963,731 to 3,965,530 _3143 DvMF_3144: DvMF_3144 - glycosyl transferase family 2 (RefSeq), at 3,965,662 to 3,967,359 _3144 DvMF_3145: DvMF_3145 - tRNA (uracil-5-)-methyltransferase Gid (RefSeq), at 3,967,683 to 3,969,020 _3145 Position (kb) 3965 3966 3967 3968Strain fitness (log2 ratio) -3 -2 -1 0 1at 3964.680 kb on - strand, within DvMF_3143at 3964.694 kb on + strand, within DvMF_3143at 3964.752 kb on + strand, within DvMF_3143at 3964.792 kb on - strand, within DvMF_3143at 3964.877 kb on + strand, within DvMF_3143at 3964.941 kb on + strand, within DvMF_3143at 3964.942 kb on - strand, within DvMF_3143at 3965.076 kb on + strand, within DvMF_3143at 3965.084 kb on - strand, within DvMF_3143at 3965.236 kb on - strand, within DvMF_3143at 3965.283 kb on + strand, within DvMF_3143at 3965.735 kb on - strandat 3965.735 kb on - strandat 3965.972 kb on + strand, within DvMF_3144at 3965.980 kb on - strand, within DvMF_3144at 3966.276 kb on + strand, within DvMF_3144at 3966.334 kb on + strand, within DvMF_3144at 3966.548 kb on + strand, within DvMF_3144at 3966.773 kb on + strand, within DvMF_3144at 3966.871 kb on - strand, within DvMF_3144at 3966.887 kb on - strand, within DvMF_3144at 3967.074 kb on - strand, within DvMF_3144at 3967.076 kb on - strand, within DvMF_3144at 3967.093 kb on - strand, within DvMF_3144at 3967.137 kb on + strand, within DvMF_3144at 3967.268 kb on - strandat 3968.018 kb on + strand, within DvMF_3145at 3968.172 kb on + strand, within DvMF_3145at 3968.172 kb on + strand, within DvMF_3145at 3968.218 kb on + strand, within DvMF_3145at 3968.248 kb on + strand, within DvMF_3145at 3968.268 kb on - strand, within DvMF_3145

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM
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3,964,680 - DvMF_3143 0.53 +0.1
3,964,694 + DvMF_3143 0.54 +0.1
3,964,752 + DvMF_3143 0.57 +0.1
3,964,792 - DvMF_3143 0.59 -1.5
3,964,877 + DvMF_3143 0.64 -1.1
3,964,941 + DvMF_3143 0.67 -0.0
3,964,942 - DvMF_3143 0.67 -1.0
3,965,076 + DvMF_3143 0.75 +0.1
3,965,084 - DvMF_3143 0.75 -0.4
3,965,236 - DvMF_3143 0.84 -0.0
3,965,283 + DvMF_3143 0.86 -0.6
3,965,735 - -0.7
3,965,735 - -0.7
3,965,972 + DvMF_3144 0.18 -0.4
3,965,980 - DvMF_3144 0.19 +1.4
3,966,276 + DvMF_3144 0.36 -2.8
3,966,334 + DvMF_3144 0.40 -0.4
3,966,548 + DvMF_3144 0.52 +0.0
3,966,773 + DvMF_3144 0.65 -0.0
3,966,871 - DvMF_3144 0.71 -0.8
3,966,887 - DvMF_3144 0.72 -0.4
3,967,074 - DvMF_3144 0.83 -0.1
3,967,076 - DvMF_3144 0.83 -0.5
3,967,093 - DvMF_3144 0.84 -1.2
3,967,137 + DvMF_3144 0.87 +0.2
3,967,268 - -1.7
3,968,018 + DvMF_3145 0.25 -0.4
3,968,172 + DvMF_3145 0.37 -3.3
3,968,172 + DvMF_3145 0.37 -0.2
3,968,218 + DvMF_3145 0.40 +0.4
3,968,248 + DvMF_3145 0.42 -0.6
3,968,268 - DvMF_3145 0.44 -0.7

Or see this region's nucleotide sequence