Experiment: MoYLS4 with Aluminum chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2620 and DvMF_2621 are separated by 10 nucleotides DvMF_2621 and DvMF_2622 are separated by 17 nucleotides
DvMF_2620: DvMF_2620 - nitrogenase MoFe cofactor biosynthesis protein NifE (RefSeq), at 3,309,366 to 3,310,790
_2620
DvMF_2621: DvMF_2621 - Nitrogenase (RefSeq), at 3,310,801 to 3,312,417
_2621
DvMF_2622: DvMF_2622 - nitrogenase cofactor biosynthesis protein NifB (RefSeq), at 3,312,435 to 3,313,718
_2622
Position (kb)
3310
3311
3312
3313 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3309.999 kb on - strand, within DvMF_2620 at 3310.113 kb on + strand, within DvMF_2620 at 3310.113 kb on + strand, within DvMF_2620 at 3310.113 kb on + strand, within DvMF_2620 at 3310.121 kb on - strand, within DvMF_2620 at 3310.121 kb on - strand, within DvMF_2620 at 3310.409 kb on + strand, within DvMF_2620 at 3310.409 kb on + strand, within DvMF_2620 at 3310.417 kb on - strand, within DvMF_2620 at 3310.704 kb on + strand at 3310.944 kb on - strand at 3310.951 kb on - strand at 3311.122 kb on - strand, within DvMF_2621 at 3311.399 kb on + strand, within DvMF_2621 at 3311.467 kb on + strand, within DvMF_2621 at 3311.477 kb on + strand, within DvMF_2621 at 3311.485 kb on - strand, within DvMF_2621 at 3311.585 kb on + strand, within DvMF_2621 at 3311.585 kb on + strand, within DvMF_2621 at 3311.594 kb on + strand, within DvMF_2621 at 3311.627 kb on + strand, within DvMF_2621 at 3311.842 kb on - strand, within DvMF_2621 at 3311.864 kb on - strand, within DvMF_2621 at 3311.926 kb on - strand, within DvMF_2621 at 3312.283 kb on + strand at 3312.400 kb on + strand at 3312.591 kb on + strand, within DvMF_2622 at 3312.591 kb on + strand, within DvMF_2622 at 3312.892 kb on - strand, within DvMF_2622 at 3312.976 kb on + strand, within DvMF_2622 at 3312.976 kb on + strand, within DvMF_2622 at 3312.976 kb on + strand, within DvMF_2622 at 3312.976 kb on + strand, within DvMF_2622 at 3312.984 kb on - strand, within DvMF_2622 at 3313.004 kb on + strand, within DvMF_2622 at 3313.082 kb on - strand, within DvMF_2622 at 3313.415 kb on - strand, within DvMF_2622
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM remove 3,309,999 - DvMF_2620 0.44 -0.5 3,310,113 + DvMF_2620 0.52 +0.3 3,310,113 + DvMF_2620 0.52 -1.5 3,310,113 + DvMF_2620 0.52 -0.1 3,310,121 - DvMF_2620 0.53 -1.5 3,310,121 - DvMF_2620 0.53 -0.6 3,310,409 + DvMF_2620 0.73 -1.1 3,310,409 + DvMF_2620 0.73 -1.9 3,310,417 - DvMF_2620 0.74 -0.1 3,310,704 + -3.5 3,310,944 - -4.5 3,310,951 - -0.6 3,311,122 - DvMF_2621 0.20 -2.1 3,311,399 + DvMF_2621 0.37 -2.1 3,311,467 + DvMF_2621 0.41 -0.6 3,311,477 + DvMF_2621 0.42 -1.5 3,311,485 - DvMF_2621 0.42 -0.6 3,311,585 + DvMF_2621 0.48 -0.1 3,311,585 + DvMF_2621 0.48 -1.6 3,311,594 + DvMF_2621 0.49 -0.3 3,311,627 + DvMF_2621 0.51 -0.7 3,311,842 - DvMF_2621 0.64 +0.6 3,311,864 - DvMF_2621 0.66 -0.3 3,311,926 - DvMF_2621 0.70 -2.0 3,312,283 + -1.3 3,312,400 + -0.4 3,312,591 + DvMF_2622 0.12 -0.5 3,312,591 + DvMF_2622 0.12 -0.9 3,312,892 - DvMF_2622 0.36 +0.6 3,312,976 + DvMF_2622 0.42 -0.8 3,312,976 + DvMF_2622 0.42 +0.1 3,312,976 + DvMF_2622 0.42 -0.1 3,312,976 + DvMF_2622 0.42 -0.9 3,312,984 - DvMF_2622 0.43 -0.7 3,313,004 + DvMF_2622 0.44 -0.8 3,313,082 - DvMF_2622 0.50 -1.0 3,313,415 - DvMF_2622 0.76 -0.7
Or see this region's nucleotide sequence