Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2564

Experiment: MoYLS4 with Aluminum chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2563 and DvMF_2564 are separated by 600 nucleotidesDvMF_2564 and DvMF_2565 are separated by 159 nucleotides DvMF_2563: DvMF_2563 - protein of unknown function DUF721 (RefSeq), at 3,238,334 to 3,238,870 _2563 DvMF_2564: DvMF_2564 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,239,471 to 3,241,990 _2564 DvMF_2565: DvMF_2565 - periplasmic phosphate binding protein (RefSeq), at 3,242,150 to 3,243,184 _2565 Position (kb) 3239 3240 3241 3242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3238.876 kb on + strandat 3239.023 kb on - strandat 3239.174 kb on - strandat 3239.236 kb on + strandat 3239.319 kb on - strandat 3239.392 kb on + strandat 3239.400 kb on - strandat 3239.407 kb on + strandat 3239.455 kb on + strandat 3239.457 kb on - strandat 3239.595 kb on + strandat 3239.662 kb on - strandat 3239.683 kb on + strandat 3239.813 kb on - strand, within DvMF_2564at 3239.820 kb on - strand, within DvMF_2564at 3239.852 kb on - strand, within DvMF_2564at 3240.076 kb on + strand, within DvMF_2564at 3240.215 kb on - strand, within DvMF_2564at 3240.262 kb on + strand, within DvMF_2564at 3240.262 kb on + strand, within DvMF_2564at 3240.286 kb on + strand, within DvMF_2564at 3240.304 kb on - strand, within DvMF_2564at 3240.446 kb on + strand, within DvMF_2564at 3240.539 kb on - strand, within DvMF_2564at 3240.743 kb on + strand, within DvMF_2564at 3240.743 kb on + strand, within DvMF_2564at 3240.780 kb on - strand, within DvMF_2564at 3240.839 kb on - strand, within DvMF_2564at 3240.908 kb on - strand, within DvMF_2564at 3240.993 kb on + strand, within DvMF_2564at 3241.214 kb on + strand, within DvMF_2564at 3241.229 kb on + strand, within DvMF_2564at 3241.263 kb on - strand, within DvMF_2564at 3241.347 kb on + strand, within DvMF_2564at 3241.469 kb on - strand, within DvMF_2564at 3241.609 kb on + strand, within DvMF_2564at 3242.059 kb on + strandat 3242.060 kb on + strandat 3242.242 kb on + strandat 3242.390 kb on - strand, within DvMF_2565at 3242.622 kb on + strand, within DvMF_2565

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM
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3,238,876 + -0.6
3,239,023 - -0.5
3,239,174 - +0.2
3,239,236 + -0.3
3,239,319 - -0.6
3,239,392 + -1.0
3,239,400 - -0.3
3,239,407 + -0.7
3,239,455 + -0.4
3,239,457 - -0.6
3,239,595 + -0.3
3,239,662 - -1.4
3,239,683 + +1.3
3,239,813 - DvMF_2564 0.14 -0.5
3,239,820 - DvMF_2564 0.14 +0.1
3,239,852 - DvMF_2564 0.15 -0.3
3,240,076 + DvMF_2564 0.24 -2.0
3,240,215 - DvMF_2564 0.30 -1.0
3,240,262 + DvMF_2564 0.31 -0.4
3,240,262 + DvMF_2564 0.31 -0.8
3,240,286 + DvMF_2564 0.32 -0.1
3,240,304 - DvMF_2564 0.33 -1.0
3,240,446 + DvMF_2564 0.39 -0.6
3,240,539 - DvMF_2564 0.42 -0.1
3,240,743 + DvMF_2564 0.50 -0.6
3,240,743 + DvMF_2564 0.50 -0.4
3,240,780 - DvMF_2564 0.52 -0.6
3,240,839 - DvMF_2564 0.54 -2.4
3,240,908 - DvMF_2564 0.57 -0.9
3,240,993 + DvMF_2564 0.60 +0.2
3,241,214 + DvMF_2564 0.69 -1.9
3,241,229 + DvMF_2564 0.70 -0.5
3,241,263 - DvMF_2564 0.71 -0.5
3,241,347 + DvMF_2564 0.74 -4.7
3,241,469 - DvMF_2564 0.79 -0.2
3,241,609 + DvMF_2564 0.85 -0.9
3,242,059 + -0.9
3,242,060 + -0.4
3,242,242 + -1.6
3,242,390 - DvMF_2565 0.23 +0.1
3,242,622 + DvMF_2565 0.46 -0.8

Or see this region's nucleotide sequence