Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1919

Experiment: MoYLS4 with Aluminum chloride 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1918 and DvMF_1919 are separated by 139 nucleotidesDvMF_1919 and DvMF_1920 are separated by 12 nucleotidesDvMF_1920 and DvMF_1921 are separated by 211 nucleotides DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325 _1918 DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136 _1919 DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898 _1920 DvMF_1921: DvMF_1921 - A/G-specific adenine glycosylase (RefSeq), at 2,367,110 to 2,368,414 _1921 Position (kb) 2365 2366 2367Strain fitness (log2 ratio) -2 -1 0 1at 2364.854 kb on + strand, within DvMF_1918at 2365.019 kb on + strand, within DvMF_1918at 2365.333 kb on - strandat 2365.476 kb on - strandat 2365.596 kb on + strand, within DvMF_1919at 2365.604 kb on - strand, within DvMF_1919at 2366.112 kb on + strandat 2366.225 kb on + strand, within DvMF_1920at 2366.225 kb on + strand, within DvMF_1920at 2366.233 kb on - strand, within DvMF_1920at 2366.459 kb on + strand, within DvMF_1920at 2366.872 kb on + strandat 2366.910 kb on - strandat 2367.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM
remove
2,364,854 + DvMF_1918 0.37 -0.7
2,365,019 + DvMF_1918 0.59 -0.5
2,365,333 - -1.9
2,365,476 - -1.0
2,365,596 + DvMF_1919 0.19 -0.1
2,365,604 - DvMF_1919 0.21 -1.4
2,366,112 + -0.1
2,366,225 + DvMF_1920 0.10 -0.9
2,366,225 + DvMF_1920 0.10 -0.4
2,366,233 - DvMF_1920 0.11 -0.8
2,366,459 + DvMF_1920 0.41 -0.8
2,366,872 + -0.6
2,366,910 - -1.0
2,367,046 - -0.7

Or see this region's nucleotide sequence