Experiment: MoYLS4 with Aluminum chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1731 and DvMF_1732 overlap by 4 nucleotides DvMF_1732 and DvMF_1733 are separated by 11 nucleotides DvMF_1733 and DvMF_1734 are separated by 144 nucleotides
DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899
_1731
DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864
_1732
DvMF_1733: DvMF_1733 - nickel-dependent hydrogenase large subunit (RefSeq), at 2,117,876 to 2,119,525
_1733
DvMF_1734: DvMF_1734 - ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq), at 2,119,670 to 2,120,653
_1734
Position (kb)
2117
2118
2119
2120 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2117.132 kb on - strand, within DvMF_1732 at 2117.351 kb on + strand, within DvMF_1732 at 2117.534 kb on + strand, within DvMF_1732 at 2117.577 kb on - strand, within DvMF_1732 at 2117.577 kb on - strand, within DvMF_1732 at 2117.585 kb on + strand, within DvMF_1732 at 2117.701 kb on + strand, within DvMF_1732 at 2117.709 kb on - strand, within DvMF_1732 at 2117.723 kb on + strand, within DvMF_1732 at 2117.778 kb on + strand at 2117.817 kb on - strand at 2117.823 kb on - strand at 2117.926 kb on + strand at 2118.052 kb on + strand, within DvMF_1733 at 2118.077 kb on - strand, within DvMF_1733 at 2118.133 kb on + strand, within DvMF_1733 at 2118.187 kb on + strand, within DvMF_1733 at 2118.291 kb on + strand, within DvMF_1733 at 2118.665 kb on + strand, within DvMF_1733 at 2118.689 kb on - strand, within DvMF_1733 at 2118.943 kb on + strand, within DvMF_1733 at 2118.950 kb on + strand, within DvMF_1733 at 2119.094 kb on + strand, within DvMF_1733 at 2119.231 kb on + strand, within DvMF_1733 at 2119.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM remove 2,117,132 - DvMF_1732 0.24 -1.0 2,117,351 + DvMF_1732 0.47 +0.4 2,117,534 + DvMF_1732 0.66 -0.2 2,117,577 - DvMF_1732 0.70 +0.1 2,117,577 - DvMF_1732 0.70 -0.6 2,117,585 + DvMF_1732 0.71 -0.2 2,117,701 + DvMF_1732 0.83 -0.2 2,117,709 - DvMF_1732 0.84 -1.7 2,117,723 + DvMF_1732 0.85 -2.1 2,117,778 + +0.2 2,117,817 - -0.8 2,117,823 - -4.5 2,117,926 + -2.6 2,118,052 + DvMF_1733 0.11 -0.4 2,118,077 - DvMF_1733 0.12 -0.1 2,118,133 + DvMF_1733 0.16 +0.6 2,118,187 + DvMF_1733 0.19 +0.7 2,118,291 + DvMF_1733 0.25 -3.5 2,118,665 + DvMF_1733 0.48 +1.2 2,118,689 - DvMF_1733 0.49 -1.3 2,118,943 + DvMF_1733 0.65 +0.9 2,118,950 + DvMF_1733 0.65 -0.7 2,119,094 + DvMF_1733 0.74 -0.3 2,119,231 + DvMF_1733 0.82 -1.0 2,119,668 - -0.3
Or see this region's nucleotide sequence