Experiment: MoYLS4 with Aluminum chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1615 and DvMF_1616 are separated by 371 nucleotides DvMF_1616 and DvMF_1617 overlap by 26 nucleotides DvMF_1617 and DvMF_1618 are separated by 33 nucleotides
DvMF_1615: DvMF_1615 - hypothetical protein (RefSeq), at 1,990,770 to 1,991,183
_1615
DvMF_1616: DvMF_1616 - hypothetical protein (RefSeq), at 1,991,555 to 1,991,902
_1616
DvMF_1617: DvMF_1617 - flagellar hook capping protein (RefSeq), at 1,991,877 to 1,992,545
_1617
DvMF_1618: DvMF_1618 - protein of unknown function DUF1078 domain protein (RefSeq), at 1,992,579 to 1,994,156
_1618
Position (kb)
1991
1992
1993 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1991.034 kb on - strand, within DvMF_1615 at 1991.365 kb on + strand at 1992.065 kb on - strand, within DvMF_1617 at 1992.125 kb on - strand, within DvMF_1617 at 1992.166 kb on - strand, within DvMF_1617 at 1992.206 kb on + strand, within DvMF_1617 at 1992.218 kb on + strand, within DvMF_1617 at 1992.229 kb on + strand, within DvMF_1617 at 1992.302 kb on - strand, within DvMF_1617 at 1992.618 kb on + strand at 1992.620 kb on + strand at 1992.636 kb on - strand at 1992.668 kb on + strand at 1992.689 kb on + strand at 1992.712 kb on - strand at 1992.828 kb on - strand, within DvMF_1618 at 1992.941 kb on + strand, within DvMF_1618 at 1992.974 kb on - strand, within DvMF_1618 at 1993.083 kb on - strand, within DvMF_1618 at 1993.140 kb on + strand, within DvMF_1618
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM remove 1,991,034 - DvMF_1615 0.64 -1.1 1,991,365 + -0.4 1,992,065 - DvMF_1617 0.28 -0.1 1,992,125 - DvMF_1617 0.37 +0.1 1,992,166 - DvMF_1617 0.43 -0.6 1,992,206 + DvMF_1617 0.49 -0.6 1,992,218 + DvMF_1617 0.51 +0.2 1,992,229 + DvMF_1617 0.53 -0.9 1,992,302 - DvMF_1617 0.64 +0.3 1,992,618 + -1.9 1,992,620 + -0.3 1,992,636 - -0.6 1,992,668 + -0.3 1,992,689 + -1.3 1,992,712 - -0.8 1,992,828 - DvMF_1618 0.16 -3.4 1,992,941 + DvMF_1618 0.23 +1.2 1,992,974 - DvMF_1618 0.25 -1.0 1,993,083 - DvMF_1618 0.32 -0.9 1,993,140 + DvMF_1618 0.36 -0.4
Or see this region's nucleotide sequence