Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1569

Experiment: MoYLS4 with Aluminum chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1567 and DvMF_1568 are separated by 102 nucleotidesDvMF_1568 and DvMF_1569 overlap by 1 nucleotidesDvMF_1569 and DvMF_1570 are separated by 10 nucleotidesDvMF_1570 and DvMF_1571 are separated by 176 nucleotides DvMF_1567: DvMF_1567 - D-lactate dehydrogenase (cytochrome) (RefSeq), at 1,933,443 to 1,934,867 _1567 DvMF_1568: DvMF_1568 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,934,970 to 1,935,644 _1568 DvMF_1569: DvMF_1569 - ABC transporter related (RefSeq), at 1,935,644 to 1,936,429 _1569 DvMF_1570: DvMF_1570 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,936,440 to 1,937,120 _1570 DvMF_1571: DvMF_1571 - extracellular solute-binding protein family 3 (RefSeq), at 1,937,297 to 1,938,046 _1571 Position (kb) 1935 1936 1937Strain fitness (log2 ratio) -2 -1 0 1at 1934.711 kb on + strand, within DvMF_1567at 1934.727 kb on + strandat 1934.756 kb on - strandat 1935.359 kb on - strand, within DvMF_1568at 1935.371 kb on - strand, within DvMF_1568at 1935.510 kb on - strand, within DvMF_1568at 1935.795 kb on + strand, within DvMF_1569at 1935.799 kb on - strand, within DvMF_1569at 1935.799 kb on - strand, within DvMF_1569at 1936.314 kb on - strand, within DvMF_1569at 1936.319 kb on - strand, within DvMF_1569at 1936.494 kb on + strandat 1936.509 kb on - strand, within DvMF_1570at 1936.510 kb on - strand, within DvMF_1570at 1936.510 kb on - strand, within DvMF_1570at 1936.554 kb on - strand, within DvMF_1570at 1936.565 kb on + strand, within DvMF_1570at 1936.642 kb on + strand, within DvMF_1570at 1936.706 kb on + strand, within DvMF_1570at 1936.827 kb on - strand, within DvMF_1570at 1936.938 kb on - strand, within DvMF_1570at 1936.999 kb on + strand, within DvMF_1570at 1937.226 kb on + strandat 1937.254 kb on + strandat 1937.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM
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1,934,711 + DvMF_1567 0.89 -0.9
1,934,727 + -1.0
1,934,756 - +0.8
1,935,359 - DvMF_1568 0.58 -0.8
1,935,371 - DvMF_1568 0.59 -0.2
1,935,510 - DvMF_1568 0.80 +0.1
1,935,795 + DvMF_1569 0.19 -1.2
1,935,799 - DvMF_1569 0.20 -0.9
1,935,799 - DvMF_1569 0.20 -0.4
1,936,314 - DvMF_1569 0.85 +0.2
1,936,319 - DvMF_1569 0.86 -2.2
1,936,494 + +0.5
1,936,509 - DvMF_1570 0.10 -0.5
1,936,510 - DvMF_1570 0.10 -0.5
1,936,510 - DvMF_1570 0.10 -0.1
1,936,554 - DvMF_1570 0.17 -0.5
1,936,565 + DvMF_1570 0.18 -0.3
1,936,642 + DvMF_1570 0.30 -0.8
1,936,706 + DvMF_1570 0.39 -0.8
1,936,827 - DvMF_1570 0.57 -0.4
1,936,938 - DvMF_1570 0.73 +0.0
1,936,999 + DvMF_1570 0.82 +0.2
1,937,226 + -0.8
1,937,254 + +0.1
1,937,364 - +0.2

Or see this region's nucleotide sequence