Experiment: MoYLS4 with Aluminum chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0376 and DvMF_0377 are separated by 52 nucleotides DvMF_0377 and DvMF_0378 are separated by 277 nucleotides DvMF_0378 and DvMF_R0018 are separated by 149 nucleotides DvMF_R0018 and DvMF_0379 are separated by 258 nucleotides
DvMF_0376: DvMF_0376 - permease YjgP/YjgQ family protein (RefSeq), at 442,813 to 443,952
_0376
DvMF_0377: DvMF_0377 - hypothetical protein (RefSeq), at 444,005 to 444,202
_0377
DvMF_0378: DvMF_0378 - undecaprenol kinase (RefSeq), at 444,480 to 445,277
_0378
DvMF_R0018: DvMF_R0018 - tRNA-Met (RefSeq), at 445,427 to 445,503
_R0018
DvMF_0379: DvMF_0379 - natural resistance-associated macrophage protein (RefSeq), at 445,762 to 447,087
_0379
Position (kb) 444
445
446 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 444.437 kb on - strand at 444.466 kb on + strand at 444.732 kb on - strand, within DvMF_0378 at 445.174 kb on + strand, within DvMF_0378 at 445.182 kb on - strand, within DvMF_0378 at 445.234 kb on + strand at 445.327 kb on - strand at 445.621 kb on + strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.718 kb on - strand at 445.718 kb on - strand at 445.903 kb on - strand, within DvMF_0379 at 445.909 kb on - strand, within DvMF_0379 at 446.007 kb on + strand, within DvMF_0379 at 446.014 kb on + strand, within DvMF_0379 at 446.015 kb on - strand, within DvMF_0379 at 446.037 kb on - strand, within DvMF_0379 at 446.230 kb on + strand, within DvMF_0379 at 446.238 kb on - strand, within DvMF_0379
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM remove 444,437 - -0.6 444,466 + -1.6 444,732 - DvMF_0378 0.32 -2.4 445,174 + DvMF_0378 0.87 -2.8 445,182 - DvMF_0378 0.88 -0.5 445,234 + -0.9 445,327 - -0.4 445,621 + -3.9 445,710 + -1.4 445,710 + +0.4 445,710 + -0.8 445,718 - -0.6 445,718 - +1.5 445,903 - DvMF_0379 0.11 -0.9 445,909 - DvMF_0379 0.11 -3.9 446,007 + DvMF_0379 0.18 +0.1 446,014 + DvMF_0379 0.19 +0.3 446,015 - DvMF_0379 0.19 -0.9 446,037 - DvMF_0379 0.21 -0.7 446,230 + DvMF_0379 0.35 -1.2 446,238 - DvMF_0379 0.36 -1.1
Or see this region's nucleotide sequence