Experiment: MoYLS4 with Aluminum chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0038 and DvMF_0039 overlap by 4 nucleotides DvMF_0039 and DvMF_0040 overlap by 1 nucleotides DvMF_0040 and DvMF_0041 are separated by 143 nucleotides DvMF_0041 and DvMF_0042 are separated by 86 nucleotides
DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414
_0038
DvMF_0039: DvMF_0039 - ABC transporter related (RefSeq), at 51,411 to 52,319
_0039
DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302
_0040
DvMF_0041: DvMF_0041 - protein of unknown function DUF330 (RefSeq), at 53,446 to 54,039
_0041
DvMF_0042: DvMF_0042 - diguanylate cyclase (RefSeq), at 54,126 to 55,274
_0042
Position (kb) 52
53
54 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 51.367 kb on - strand at 51.431 kb on - strand at 51.593 kb on + strand, within DvMF_0039 at 51.610 kb on + strand, within DvMF_0039 at 51.636 kb on + strand, within DvMF_0039 at 51.860 kb on + strand, within DvMF_0039 at 51.860 kb on + strand, within DvMF_0039 at 51.868 kb on - strand, within DvMF_0039 at 52.289 kb on - strand at 52.333 kb on + strand at 52.348 kb on - strand at 52.454 kb on - strand, within DvMF_0040 at 52.829 kb on + strand, within DvMF_0040 at 52.829 kb on + strand, within DvMF_0040 at 52.837 kb on - strand, within DvMF_0040 at 52.837 kb on - strand, within DvMF_0040 at 52.860 kb on - strand, within DvMF_0040 at 52.888 kb on + strand, within DvMF_0040 at 53.238 kb on + strand at 53.289 kb on - strand at 53.340 kb on - strand at 53.396 kb on - strand at 53.764 kb on + strand, within DvMF_0041 at 53.772 kb on - strand, within DvMF_0041 at 53.886 kb on - strand, within DvMF_0041 at 54.033 kb on + strand at 54.125 kb on - strand at 54.236 kb on + strand at 54.268 kb on + strand, within DvMF_0042
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM remove 51,367 - -0.7 51,431 - -3.5 51,593 + DvMF_0039 0.20 -0.7 51,610 + DvMF_0039 0.22 -1.0 51,636 + DvMF_0039 0.25 +0.2 51,860 + DvMF_0039 0.49 -5.3 51,860 + DvMF_0039 0.49 +0.4 51,868 - DvMF_0039 0.50 +0.6 52,289 - -1.4 52,333 + -1.0 52,348 - +0.2 52,454 - DvMF_0040 0.14 +0.4 52,829 + DvMF_0040 0.52 +1.1 52,829 + DvMF_0040 0.52 -0.1 52,837 - DvMF_0040 0.53 -0.2 52,837 - DvMF_0040 0.53 +0.8 52,860 - DvMF_0040 0.55 -3.8 52,888 + DvMF_0040 0.58 -1.7 53,238 + -1.0 53,289 - -0.4 53,340 - -0.8 53,396 - -0.2 53,764 + DvMF_0041 0.54 +0.2 53,772 - DvMF_0041 0.55 -1.0 53,886 - DvMF_0041 0.74 -2.6 54,033 + -1.2 54,125 - -0.5 54,236 + -0.5 54,268 + DvMF_0042 0.12 -0.0
Or see this region's nucleotide sequence