Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0023

Experiment: MoYLS4 with Aluminum chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0022 and DvMF_0023 are separated by 58 nucleotidesDvMF_0023 and DvMF_0024 are separated by 81 nucleotides DvMF_0022: DvMF_0022 - metal dependent phosphohydrolase (RefSeq), at 28,080 to 29,165 _0022 DvMF_0023: DvMF_0023 - dTMP kinase (RefSeq), at 29,224 to 29,871 _0023 DvMF_0024: DvMF_0024 - histone deacetylase superfamily (RefSeq), at 29,953 to 31,272 _0024 Position (kb) 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 28.247 kb on - strand, within DvMF_0022at 28.247 kb on - strand, within DvMF_0022at 28.255 kb on + strand, within DvMF_0022at 28.277 kb on + strand, within DvMF_0022at 28.327 kb on - strand, within DvMF_0022at 28.338 kb on - strand, within DvMF_0022at 28.453 kb on - strand, within DvMF_0022at 28.581 kb on - strand, within DvMF_0022at 28.790 kb on - strand, within DvMF_0022at 28.830 kb on - strand, within DvMF_0022at 28.888 kb on - strand, within DvMF_0022at 28.907 kb on + strand, within DvMF_0022at 28.910 kb on - strand, within DvMF_0022at 28.910 kb on - strand, within DvMF_0022at 28.943 kb on + strand, within DvMF_0022at 29.002 kb on - strand, within DvMF_0022at 29.928 kb on + strandat 30.401 kb on + strand, within DvMF_0024at 30.587 kb on - strand, within DvMF_0024at 30.616 kb on - strand, within DvMF_0024at 30.725 kb on - strand, within DvMF_0024

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 10 mM
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28,247 - DvMF_0022 0.15 -2.1
28,247 - DvMF_0022 0.15 -0.4
28,255 + DvMF_0022 0.16 -0.5
28,277 + DvMF_0022 0.18 -4.0
28,327 - DvMF_0022 0.23 +0.2
28,338 - DvMF_0022 0.24 +0.3
28,453 - DvMF_0022 0.34 +1.4
28,581 - DvMF_0022 0.46 +0.2
28,790 - DvMF_0022 0.65 -4.3
28,830 - DvMF_0022 0.69 -0.6
28,888 - DvMF_0022 0.74 +0.7
28,907 + DvMF_0022 0.76 +0.7
28,910 - DvMF_0022 0.76 -0.3
28,910 - DvMF_0022 0.76 -0.2
28,943 + DvMF_0022 0.79 -0.8
29,002 - DvMF_0022 0.85 +0.0
29,928 + +1.5
30,401 + DvMF_0024 0.34 -0.8
30,587 - DvMF_0024 0.48 +1.5
30,616 - DvMF_0024 0.50 -1.6
30,725 - DvMF_0024 0.58 -2.7

Or see this region's nucleotide sequence