Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3201

Experiment: amylopectin from maize

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize
4,089,289	-				-1.1
4,089,315	-				-2.4
4,089,360	-		BT3200	0.10	-1.5
4,089,427	-		BT3200	0.23	-2.0
4,089,430	-		BT3200	0.24	-1.0
4,089,689	-		BT3200	0.74	-0.9
4,089,783	-				-1.0
4,089,805	-				+0.4
4,089,816	-				-0.0
4,089,995	-				-0.6
4,090,018	-				-0.9
4,090,023	-				-0.3
4,090,025	-				+0.3
4,090,052	-				-0.9
4,090,092	-				-0.6
4,090,094	-				+0.1
4,090,108	+				-1.8
4,090,177	+				-0.9
4,090,179	+				-1.9
4,090,198	+				-2.0
4,090,209	-				-0.1
4,090,229	+				+1.0
4,090,233	+				-1.6
4,090,332	+				-1.2
4,090,334	+				-0.3
4,090,359	+		BT3201	0.10	-1.1
4,090,360	-		BT3201	0.10	-3.0
4,090,387	-		BT3201	0.11	-3.4
4,090,401	+		BT3201	0.12	-0.3
4,090,446	-		BT3201	0.13	-2.1
4,090,463	+		BT3201	0.14	+0.4
4,090,466	-		BT3201	0.14	-2.6
4,090,466	-		BT3201	0.14	-0.7
4,090,489	-		BT3201	0.14	-3.2
4,090,545	+		BT3201	0.16	-1.0
4,090,592	-		BT3201	0.18	-1.3
4,090,632	-		BT3201	0.19	-0.4
4,090,664	-		BT3201	0.20	-1.2
4,090,667	+		BT3201	0.20	-0.5
4,090,668	-		BT3201	0.20	+0.2
4,090,668	-		BT3201	0.20	-0.2
4,090,712	+		BT3201	0.22	-0.8
4,090,741	-		BT3201	0.22	-1.1
4,090,771	-		BT3201	0.23	-1.5
4,090,775	+		BT3201	0.24	-1.3
4,090,775	+		BT3201	0.24	-2.3
4,090,775	+		BT3201	0.24	-1.1
4,090,776	-		BT3201	0.24	+2.0
4,090,776	-		BT3201	0.24	-1.7
4,090,776	-		BT3201	0.24	+1.4
4,090,815	-		BT3201	0.25	-0.1
4,090,847	-		BT3201	0.26	+1.4
4,090,861	+		BT3201	0.26	-1.7
4,090,872	+		BT3201	0.27	-0.8
4,090,910	-		BT3201	0.28	-1.0
4,090,936	+		BT3201	0.29	-0.4
4,090,937	-		BT3201	0.29	+0.5
4,090,937	-		BT3201	0.29	-3.0
4,090,937	-		BT3201	0.29	-2.4
4,090,947	+		BT3201	0.29	-1.8
4,090,948	-		BT3201	0.29	-1.1
4,090,949	+		BT3201	0.29	-1.5
4,090,949	+		BT3201	0.29	-2.3
4,090,950	-		BT3201	0.29	-0.9
4,090,956	-		BT3201	0.29	-2.0
4,090,957	+		BT3201	0.29	-2.6
4,090,958	-		BT3201	0.29	-1.2
4,091,003	+		BT3201	0.31	-3.2
4,091,017	+		BT3201	0.31	-1.6
4,091,049	+		BT3201	0.32	+0.8
4,091,050	-		BT3201	0.32	-0.1
4,091,061	+		BT3201	0.33	-0.5
4,091,062	-		BT3201	0.33	-3.5
4,091,075	+		BT3201	0.33	-0.6
4,091,087	+		BT3201	0.33	-4.0
4,091,092	-		BT3201	0.34	-1.0
4,091,134	+		BT3201	0.35	-1.6
4,091,138	+		BT3201	0.35	-1.0
4,091,138	+		BT3201	0.35	-1.7
4,091,138	+		BT3201	0.35	-3.8
4,091,138	+		BT3201	0.35	-1.4
4,091,139	-		BT3201	0.35	+0.2
4,091,139	-		BT3201	0.35	-2.7
4,091,139	-		BT3201	0.35	-3.0
4,091,139	-		BT3201	0.35	+1.4
4,091,182	+		BT3201	0.36	-0.7
4,091,198	+		BT3201	0.37	-0.9
4,091,201	+		BT3201	0.37	-0.9
4,091,243	-		BT3201	0.38	-1.2
4,091,249	+		BT3201	0.39	-3.5
4,091,265	-		BT3201	0.39	+0.4
4,091,265	-		BT3201	0.39	-0.1
4,091,268	+		BT3201	0.39	-0.9
4,091,307	+		BT3201	0.40	-0.3
4,091,352	-		BT3201	0.42	-0.8
4,091,389	-		BT3201	0.43	-1.5
4,091,392	+		BT3201	0.43	-1.0
4,091,393	-		BT3201	0.43	+0.9
4,091,428	-		BT3201	0.44	-1.7
4,091,429	+		BT3201	0.44	-0.9
4,091,432	+		BT3201	0.44	-1.6
4,091,433	-		BT3201	0.44	-1.4
4,091,435	-		BT3201	0.44	-3.3
4,091,435	-		BT3201	0.44	-0.6
4,091,461	+		BT3201	0.45	-2.7
4,091,462	-		BT3201	0.45	-2.6
4,091,482	-		BT3201	0.46	+0.3
4,091,483	+		BT3201	0.46	-2.6
4,091,484	-		BT3201	0.46	-0.4
4,091,511	+		BT3201	0.47	-1.8
4,091,515	+		BT3201	0.47	-1.1
4,091,541	+		BT3201	0.48	-0.6
4,091,545	-		BT3201	0.48	-1.7
4,091,545	-		BT3201	0.48	-1.6
4,091,547	-		BT3201	0.48	-2.3
4,091,579	+		BT3201	0.49	-2.5
4,091,596	-		BT3201	0.50	-3.6
4,091,611	-		BT3201	0.50	-1.4
4,091,611	-		BT3201	0.50	-2.1
4,091,612	+		BT3201	0.50	+1.4
4,091,612	+		BT3201	0.50	+1.4
4,091,643	+		BT3201	0.51	-0.1
4,091,702	-		BT3201	0.53	-0.9
4,091,713	-		BT3201	0.53	-1.6
4,091,766	-		BT3201	0.55	-1.0
4,091,768	+		BT3201	0.55	-2.0
4,091,789	+		BT3201	0.56	-1.9
4,091,789	+		BT3201	0.56	-0.1
4,091,811	+		BT3201	0.56	-1.4
4,091,812	-		BT3201	0.56	-1.1
4,091,890	-		BT3201	0.59	-0.6
4,091,892	-		BT3201	0.59	-0.0
4,091,892	-		BT3201	0.59	-1.5
4,091,897	+		BT3201	0.59	-1.7
4,091,897	+		BT3201	0.59	-1.2
4,091,910	-		BT3201	0.60	-1.6
4,091,924	+		BT3201	0.60	-1.2
4,091,941	+		BT3201	0.61	-1.1
4,091,941	+		BT3201	0.61	+0.4
4,091,941	+		BT3201	0.61	+0.2
4,091,941	+		BT3201	0.61	-1.4
4,091,942	-		BT3201	0.61	-1.9
4,091,942	-		BT3201	0.61	-2.0
4,091,943	+		BT3201	0.61	-0.1
4,091,943	+		BT3201	0.61	-3.1
4,091,944	-		BT3201	0.61	-1.1
4,091,990	+		BT3201	0.62	-1.1
4,092,001	+		BT3201	0.62	-1.1
4,092,002	-		BT3201	0.63	-1.2
4,092,044	+		BT3201	0.64	+0.1
4,092,045	-		BT3201	0.64	+1.1
4,092,045	-		BT3201	0.64	+0.3
4,092,072	+		BT3201	0.65	-0.8
4,092,073	-		BT3201	0.65	-1.9
4,092,077	+		BT3201	0.65	-1.5
4,092,081	+		BT3201	0.65	+0.3
4,092,082	-		BT3201	0.65	-1.3
4,092,084	-		BT3201	0.65	-1.4
4,092,092	+		BT3201	0.65	-2.3
4,092,093	-		BT3201	0.65	-2.0
4,092,101	+		BT3201	0.66	-0.6
4,092,129	+		BT3201	0.67	+1.0
4,092,130	-		BT3201	0.67	+1.4
4,092,135	-		BT3201	0.67	-1.1
4,092,154	-		BT3201	0.67	-2.8
4,092,156	-		BT3201	0.67	-1.4
4,092,167	+		BT3201	0.68	+0.3
4,092,213	+		BT3201	0.69	-0.9
4,092,266	-		BT3201	0.71	-0.9
4,092,266	-		BT3201	0.71	-0.6
4,092,356	-		BT3201	0.74	+2.8
4,092,362	+		BT3201	0.74	-1.9
4,092,363	-		BT3201	0.74	-1.0
4,092,363	-		BT3201	0.74	-0.8
4,092,366	+		BT3201	0.74	-0.4
4,092,366	+		BT3201	0.74	-1.5
4,092,367	-		BT3201	0.74	-1.6
4,092,367	-		BT3201	0.74	+1.4
4,092,369	-				+1.4
4,092,369	-		BT3201	0.74	-0.9
4,092,369	-		BT3201	0.74	-1.4
4,092,369	-		BT3201	0.74	-1.4
4,092,457	-		BT3201	0.77	-1.5
4,092,457	-		BT3201	0.77	-2.1
4,092,458	+		BT3201	0.77	-1.8
4,092,458	+		BT3201	0.77	+1.2
4,092,462	-		BT3201	0.77	-0.5
4,092,465	+		BT3201	0.77	+0.3
4,092,466	-		BT3201	0.77	-4.0
4,092,467	+		BT3201	0.77	-1.0
4,092,468	-		BT3201	0.77	-2.3
4,092,532	-		BT3201	0.79	-2.1
4,092,552	+		BT3201	0.80	-1.4
4,092,554	+		BT3201	0.80	-1.0
4,092,554	+		BT3201	0.80	-1.3
4,092,575	+		BT3201	0.81	-1.7
4,092,576	-		BT3201	0.81	-3.6
4,092,581	-		BT3201	0.81	-0.9
4,092,594	-		BT3201	0.81	+2.4
4,092,634	+		BT3201	0.83	-1.4
4,092,634	+		BT3201	0.83	-1.4
4,092,635	-		BT3201	0.83	-0.1
4,092,636	+		BT3201	0.83	-1.9
4,092,636	+		BT3201	0.83	-0.1
4,092,636	+		BT3201	0.83	-3.1
4,092,637	-		BT3201	0.83	-0.5
4,092,637	-		BT3201	0.83	+1.4
4,092,643	-		BT3201	0.83	+0.3
4,092,643	-		BT3201	0.83	-1.1
4,092,643	-		BT3201	0.83	-0.5
4,092,645	-		BT3201	0.83	-1.0
4,092,656	-		BT3201	0.83	+0.4
4,092,661	-		BT3201	0.83	-2.8
4,092,662	+		BT3201	0.83	-1.4
4,092,662	+		BT3201	0.83	+1.4
4,092,662	+		BT3201	0.83	+0.6
4,092,663	-		BT3201	0.84	-0.6
4,092,678	-		BT3201	0.84	-1.9
4,092,693	+		BT3201	0.84	-0.9
4,092,694	-		BT3201	0.84	-0.6
4,092,743	+		BT3201	0.86	-0.4
4,092,743	+		BT3201	0.86	-3.1
4,092,745	+		BT3201	0.86	-1.7
4,092,746	-		BT3201	0.86	-0.7
4,092,775	+		BT3201	0.87	-0.7
4,092,776	-		BT3201	0.87	-1.2
4,092,776	-		BT3201	0.87	-1.2
4,092,776	-		BT3201	0.87	-0.9
4,092,806	-		BT3201	0.88	-1.7
4,092,886	-				-0.2
4,092,929	+				-1.2
4,092,930	-				-0.8
4,092,930	-				-0.9
4,092,930	-				-1.5
4,092,952	-				+1.8
4,092,954	-				-0.7
4,092,958	-				-0.6
4,093,023	-				-0.9
4,093,027	-				+1.6
4,093,057	-				-1.5
4,093,059	-				-0.7
4,093,062	-				-0.6
4,093,084	-				-0.7
4,093,113	+				-3.0
4,093,114	-				-2.6
4,093,119	+				+0.1
4,093,122	+				+1.4
4,093,177	+				-1.4
4,093,200	+				-1.1
4,093,270	+				-1.1
4,093,271	-				-2.0
4,093,271	-				-2.7
4,093,307	-				-0.7
4,093,327	+				-2.1
4,093,327	+				-1.9
4,093,328	-				-0.9
4,093,328	-				-2.5
4,093,343	-				+0.4
4,093,393	-				-0.1
4,093,395	-				-1.9
4,093,395	-				-0.9
4,093,395	-				-1.0
4,093,395	-				-2.8
4,093,396	+				-1.1
4,093,405	+				-0.6
4,093,416	-				-0.3
4,093,499	-				-0.6
4,093,593	-		BT3202	0.10	-1.7
4,093,631	-		BT3202	0.11	-1.0
4,093,684	+		BT3202	0.13	-0.3
4,093,697	-		BT3202	0.13	-0.9
4,093,801	-		BT3202	0.16	-1.1
4,093,805	+		BT3202	0.16	+1.4
4,093,806	-		BT3202	0.16	-1.3
4,093,825	-		BT3202	0.16	-0.4
4,093,949	-		BT3202	0.19	-1.2
4,093,973	-		BT3202	0.20	-1.8
4,093,973	-		BT3202	0.20	-0.1
4,093,984	+		BT3202	0.20	-1.4
4,093,988	+		BT3202	0.20	+0.1
4,093,988	+		BT3202	0.20	-1.5
4,093,989	-		BT3202	0.20	-2.1
4,093,989	-		BT3202	0.20	-0.8
4,093,991	+		BT3202	0.20	-1.3
4,094,042	-		BT3202	0.22	-1.5
4,094,056	-		BT3202	0.22	-0.9
4,094,058	+		BT3202	0.22	+1.4
4,094,059	-		BT3202	0.22	-1.7
4,094,059	-		BT3202	0.22	+0.4
4,094,073	-		BT3202	0.22	-0.9
4,094,089	+		BT3202	0.23	-0.6
4,094,089	+		BT3202	0.23	-0.1
4,094,148	+		BT3202	0.24	-2.5
4,094,176	+		BT3202	0.25	-0.3
4,094,180	+		BT3202	0.25	+1.2