Experiment: amylopectin from maize
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0476 and BT0477 are separated by 15 nucleotides BT0477 and BT0478 overlap by 4 nucleotides BT0478 and BT0479 are separated by 156 nucleotides
BT0476: BT0476 - D-mannose-1-phosphate guanyltransferase (NCBI ptt file), at 587,378 to 588,085
BT0476
BT0477: BT0477 - putative phosphatase (NCBI ptt file), at 588,101 to 588,571
BT0477
BT0478: BT0478 - conserved hypothetical protein (NCBI ptt file), at 588,568 to 589,674
BT0478
BT0479: BT0479 - putative glycosyltransferase (NCBI ptt file), at 589,831 to 590,655
BT0479
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 587.607 kb on - strand, within BT0476 at 587.891 kb on - strand, within BT0476 at 587.893 kb on - strand, within BT0476 at 587.895 kb on - strand, within BT0476 at 587.895 kb on - strand, within BT0476 at 588.148 kb on - strand, within BT0477 at 588.337 kb on - strand, within BT0477 at 588.337 kb on - strand, within BT0477 at 588.446 kb on - strand, within BT0477 at 588.524 kb on - strand, within BT0477 at 588.536 kb on - strand at 588.695 kb on - strand, within BT0478 at 588.811 kb on - strand, within BT0478 at 588.901 kb on - strand, within BT0478 at 588.926 kb on - strand, within BT0478 at 589.005 kb on - strand, within BT0478 at 589.020 kb on + strand, within BT0478 at 589.020 kb on + strand, within BT0478 at 589.141 kb on - strand, within BT0478 at 589.256 kb on + strand, within BT0478 at 589.379 kb on - strand, within BT0478 at 589.381 kb on - strand, within BT0478 at 589.452 kb on - strand, within BT0478 at 589.593 kb on - strand at 589.624 kb on - strand at 589.763 kb on - strand at 589.763 kb on - strand at 589.849 kb on - strand at 589.968 kb on + strand, within BT0479 at 590.046 kb on + strand, within BT0479 at 590.082 kb on + strand, within BT0479 at 590.135 kb on + strand, within BT0479 at 590.306 kb on - strand, within BT0479 at 590.431 kb on - strand, within BT0479 at 590.569 kb on - strand, within BT0479
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize remove 587,607 - BT0476 0.32 +2.3 587,891 - BT0476 0.72 -0.2 587,893 - BT0476 0.73 +0.3 587,895 - BT0476 0.73 +2.4 587,895 - BT0476 0.73 +1.3 588,148 - BT0477 0.10 -2.0 588,337 - BT0477 0.50 -1.3 588,337 - BT0477 0.50 -0.2 588,446 - BT0477 0.73 -1.5 588,524 - BT0477 0.90 +1.3 588,536 - -1.9 588,695 - BT0478 0.11 -1.2 588,811 - BT0478 0.22 -0.6 588,901 - BT0478 0.30 -2.5 588,926 - BT0478 0.32 -1.7 589,005 - BT0478 0.39 -0.5 589,020 + BT0478 0.41 -0.2 589,020 + BT0478 0.41 +1.8 589,141 - BT0478 0.52 -2.2 589,256 + BT0478 0.62 +0.8 589,379 - BT0478 0.73 -2.2 589,381 - BT0478 0.73 -0.7 589,452 - BT0478 0.80 -0.9 589,593 - +0.8 589,624 - -3.4 589,763 - +0.8 589,763 - +0.5 589,849 - -1.0 589,968 + BT0479 0.17 +1.3 590,046 + BT0479 0.26 -0.2 590,082 + BT0479 0.30 +0.3 590,135 + BT0479 0.37 +0.3 590,306 - BT0479 0.58 -1.0 590,431 - BT0479 0.73 -0.7 590,569 - BT0479 0.89 -0.2
Or see this region's nucleotide sequence