Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23370

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,251,007	+		PFLU_RS23365	0.47	-2.8
5,251,007	+		PFLU_RS23365	0.47	+1.2
5,251,007	+		PFLU_RS23365	0.47	+1.3
5,251,007	+		PFLU_RS23365	0.47	+1.5
5,251,007	+		PFLU_RS23365	0.47	+2.0
5,251,190	+		PFLU_RS23365	0.61	+0.0
5,251,190	+		PFLU_RS23365	0.61	+1.5
5,251,190	+		PFLU_RS23365	0.61	-1.5
5,251,193	+		PFLU_RS23365	0.61	+1.6
5,251,193	+		PFLU_RS23365	0.61	-0.5
5,251,193	+		PFLU_RS23365	0.61	+0.2
5,251,193	+		PFLU_RS23365	0.61	+1.2
5,251,193	+		PFLU_RS23365	0.61	-0.4
5,251,194	-		PFLU_RS23365	0.61	+0.5
5,251,194	-		PFLU_RS23365	0.61	+1.0
5,251,194	-		PFLU_RS23365	0.61	+1.2
5,251,194	-		PFLU_RS23365	0.61	+0.8
5,251,194	-		PFLU_RS23365	0.61	-0.1
5,251,194	-		PFLU_RS23365	0.61	+1.3
5,251,194	-		PFLU_RS23365	0.61	+1.6
5,251,194	-		PFLU_RS23365	0.61	+0.6
5,251,200	+		PFLU_RS23365	0.62	+2.0
5,251,220	+		PFLU_RS23365	0.64	-1.3
5,251,220	+		PFLU_RS23365	0.64	+0.1
5,251,293	-		PFLU_RS23365	0.69	-1.7
5,251,293	-		PFLU_RS23365	0.69	+2.8
5,251,293	-		PFLU_RS23365	0.69	+0.4
5,251,293	-		PFLU_RS23365	0.69	+1.9
5,251,293	-		PFLU_RS23365	0.69	-1.4
5,251,293	-		PFLU_RS23365	0.69	+1.4
5,251,293	-		PFLU_RS23365	0.69	+0.6
5,251,293	-		PFLU_RS23365	0.69	+0.9
5,251,499	+		PFLU_RS23365	0.86	+1.9
5,251,499	+		PFLU_RS23365	0.86	+0.8
5,251,499	+		PFLU_RS23365	0.86	+0.6
5,251,554	-				+1.3
5,251,594	+				+1.2
5,251,636	+				+1.5
5,251,644	-				+0.9
5,251,644	-				+0.8
5,251,705	+				-1.1
5,251,706	-				+2.0
5,251,710	+				+0.3
5,251,710	+				+1.5
5,251,710	+				-0.4
5,251,710	+				+0.4
5,251,710	+				-0.9
5,251,710	+				+0.6
5,251,710	+				+0.4
5,251,710	+				-2.6
5,251,711	-				-1.7
5,251,711	-				+1.6
5,251,765	+				+2.4
5,251,765	+				-0.7
5,251,765	+				+0.9
5,251,765	+				-1.4
5,251,766	-				-0.2
5,251,766	-				+1.0
5,251,766	-				-1.0
5,251,773	+				+1.3
5,251,773	+				+0.0
5,251,773	+				-0.2
5,251,773	+				+0.3
5,251,773	+				-0.8
5,251,773	+				-2.3
5,251,773	+				-1.0
5,251,773	+				+1.2
5,251,774	-				-2.0
5,251,774	-				+0.3
5,251,774	-				-0.4
5,251,774	-				+0.4
5,251,774	-				+0.4
5,251,782	+				-1.4
5,251,783	-				+0.5
5,251,783	-				-1.2
5,251,783	-				-1.0
5,251,871	+				+0.5
5,251,871	+				+1.0
5,251,872	-				+0.4
5,251,872	-				+0.3
5,251,872	-				-0.4
5,251,872	-				+1.8
5,251,872	-				-0.3
5,251,872	-				+2.8
5,251,873	+				+1.3
5,251,992	+				-0.7
5,251,993	-				-0.5
5,251,996	+				+1.3
5,252,138	+		PFLU_RS23370	0.17	+0.0
5,252,138	+		PFLU_RS23370	0.17	-2.3
5,252,167	-		PFLU_RS23370	0.18	-0.1
5,252,167	-		PFLU_RS23370	0.18	-1.2
5,252,167	-		PFLU_RS23370	0.18	-0.1
5,252,169	+		PFLU_RS23370	0.18	-0.2
5,252,170	-		PFLU_RS23370	0.18	+1.2
5,252,170	-		PFLU_RS23370	0.18	-0.0
5,252,170	-		PFLU_RS23370	0.18	-1.8
5,252,233	-		PFLU_RS23370	0.22	+1.7
5,252,233	-		PFLU_RS23370	0.22	-1.5
5,252,317	-		PFLU_RS23370	0.26	-1.4
5,252,365	-		PFLU_RS23370	0.28	+0.0
5,252,374	-		PFLU_RS23370	0.29	-0.8
5,252,374	-		PFLU_RS23370	0.29	+0.9
5,252,378	+		PFLU_RS23370	0.29	-2.2
5,252,378	+		PFLU_RS23370	0.29	+0.5
5,252,379	-		PFLU_RS23370	0.29	+0.5
5,252,379	-		PFLU_RS23370	0.29	+0.1
5,252,382	+		PFLU_RS23370	0.29	+0.0
5,252,382	+		PFLU_RS23370	0.29	-2.1
5,252,382	+		PFLU_RS23370	0.29	-2.9
5,252,383	-		PFLU_RS23370	0.29	-0.5
5,252,383	-		PFLU_RS23370	0.29	+0.3
5,252,384	+		PFLU_RS23370	0.29	-0.7
5,252,384	+		PFLU_RS23370	0.29	+0.3
5,252,384	+		PFLU_RS23370	0.29	+0.0
5,252,385	-		PFLU_RS23370	0.29	-1.0
5,252,386	+		PFLU_RS23370	0.29	-2.0
5,252,386	+		PFLU_RS23370	0.29	-0.7
5,252,387	-		PFLU_RS23370	0.29	+0.6
5,252,387	-		PFLU_RS23370	0.29	-1.7
5,252,388	+		PFLU_RS23370	0.30	+1.1
5,252,389	-		PFLU_RS23370	0.30	-0.4
5,252,407	-		PFLU_RS23370	0.31	+0.5
5,252,476	-		PFLU_RS23370	0.34	-2.4
5,252,476	-		PFLU_RS23370	0.34	+2.3
5,252,511	+		PFLU_RS23370	0.36	+0.9
5,252,542	+		PFLU_RS23370	0.37	+1.1
5,252,544	+		PFLU_RS23370	0.38	+3.9
5,252,637	-		PFLU_RS23370	0.42	+1.3
5,252,668	-		PFLU_RS23370	0.44	+1.6
5,252,682	+		PFLU_RS23370	0.45	-0.2
5,252,687	-		PFLU_RS23370	0.45	+1.3
5,252,687	-		PFLU_RS23370	0.45	-0.8
5,252,697	+		PFLU_RS23370	0.45	-1.0
5,252,697	+		PFLU_RS23370	0.45	+1.0
5,252,697	+		PFLU_RS23370	0.45	+0.4
5,252,698	-		PFLU_RS23370	0.45	+0.9
5,252,724	+		PFLU_RS23370	0.47	+0.5
5,252,724	+		PFLU_RS23370	0.47	-2.0
5,252,725	-		PFLU_RS23370	0.47	-1.2
5,252,725	-		PFLU_RS23370	0.47	+2.9
5,252,733	+		PFLU_RS23370	0.47	+1.2
5,252,738	+		PFLU_RS23370	0.48	-0.1
5,252,738	+		PFLU_RS23370	0.48	-0.2
5,252,744	+		PFLU_RS23370	0.48	+0.5
5,252,744	+		PFLU_RS23370	0.48	-0.5
5,252,745	-		PFLU_RS23370	0.48	-1.0
5,252,745	-		PFLU_RS23370	0.48	+2.1
5,252,745	-		PFLU_RS23370	0.48	+0.8
5,252,745	-		PFLU_RS23370	0.48	-1.0
5,252,745	-		PFLU_RS23370	0.48	-1.0
5,252,745	-		PFLU_RS23370	0.48	-0.0
5,252,745	-		PFLU_RS23370	0.48	+0.5
5,252,779	+		PFLU_RS23370	0.50	+0.0
5,252,779	+		PFLU_RS23370	0.50	-0.7
5,252,779	+		PFLU_RS23370	0.50	-1.0
5,252,780	-		PFLU_RS23370	0.50	+0.0
5,252,780	-		PFLU_RS23370	0.50	-0.1
5,252,780	-		PFLU_RS23370	0.50	+2.2
5,252,780	-		PFLU_RS23370	0.50	-0.4
5,252,781	+		PFLU_RS23370	0.50	+2.6
5,252,781	+		PFLU_RS23370	0.50	+0.5
5,252,781	+		PFLU_RS23370	0.50	-0.5
5,252,782	-		PFLU_RS23370	0.50	+0.0
5,252,782	-		PFLU_RS23370	0.50	-1.2
5,252,782	-		PFLU_RS23370	0.50	+0.2
5,252,782	-		PFLU_RS23370	0.50	+0.1
5,252,811	+		PFLU_RS23370	0.51	-1.7
5,252,818	+		PFLU_RS23370	0.52	+1.4
5,252,819	-		PFLU_RS23370	0.52	+1.1
5,252,898	-		PFLU_RS23370	0.56	+1.4
5,252,914	-		PFLU_RS23370	0.57	-2.0
5,252,918	-		PFLU_RS23370	0.57	-0.1
5,252,940	+		PFLU_RS23370	0.58	-2.1
5,252,941	-		PFLU_RS23370	0.58	-0.3
5,252,944	+		PFLU_RS23370	0.58	+0.1
5,252,945	-		PFLU_RS23370	0.58	-0.1
5,252,945	-		PFLU_RS23370	0.58	+0.8
5,253,003	+		PFLU_RS23370	0.61	-1.5
5,253,051	+		PFLU_RS23370	0.64	-2.1
5,253,123	+		PFLU_RS23370	0.67	-0.2
5,253,123	+		PFLU_RS23370	0.67	+0.8
5,253,124	-		PFLU_RS23370	0.67	+0.0
5,253,242	+		PFLU_RS23370	0.73	-1.5
5,253,243	-		PFLU_RS23370	0.74	+0.8
5,253,243	-		PFLU_RS23370	0.74	-0.6
5,253,244	+		PFLU_RS23370	0.74	-1.2
5,253,295	-		PFLU_RS23370	0.76	+0.3
5,253,314	-		PFLU_RS23370	0.77	-2.3
5,253,315	+		PFLU_RS23370	0.77	-0.7
5,253,316	-		PFLU_RS23370	0.77	-1.2
5,253,467	+		PFLU_RS23370	0.85	+0.0
5,253,627	-				+0.5
5,253,645	-				+2.6
5,253,775	+				+0.1
5,253,790	-				+1.8
5,253,899	+				+3.5
5,253,899	+				+0.3
5,253,899	+				+0.1
5,253,899	+				-1.4
5,253,900	-				-0.9
5,253,900	-				-1.8
5,253,918	+				+0.2
5,253,918	+				+3.0
5,253,918	+				+0.4
5,253,918	+				-0.7
5,253,918	+				-0.3
5,253,918	+				-0.7
5,253,918	+				-0.4
5,253,918	+				-1.2
5,253,919	-				+0.0
5,253,919	-				-0.6
5,253,919	-				-1.2
5,253,919	-				-0.4
5,253,919	-				+0.0
5,253,919	-				-0.4
5,253,919	-				+0.2
5,253,919	-				+0.2
5,253,938	+				-1.5
5,253,938	+				-0.7
5,253,938	+				+0.4
5,253,938	+				+0.0
5,253,938	+				-0.7
5,253,938	+				+2.1
5,253,938	+				+2.0
5,253,939	-				-0.7
5,253,939	-				-2.5
5,253,939	-				+1.0
5,253,939	-				-2.0
5,253,939	-				-0.8
5,253,939	-				+2.5
5,253,939	-				+0.6
5,253,939	-				+0.0
5,253,966	+				-0.8
5,253,966	+				+1.3
5,253,966	+				-1.7
5,253,966	+				-0.0
5,253,967	-				+1.2
5,253,967	-				+1.3
5,253,967	-				-0.1
5,253,967	-				+0.9
5,253,986	+				-0.2
5,253,987	-				+0.0
5,254,024	+				-1.2
5,254,025	-				+1.1
5,254,051	+				+1.0
5,254,051	+				+1.0
5,254,051	+				-0.7
5,254,051	+				-0.7
5,254,052	-				-1.0
5,254,052	-				+0.8
5,254,062	+				+0.3
5,254,062	+				+0.7
5,254,062	+				+1.8
5,254,062	+				-1.2
5,254,062	+				-0.7
5,254,062	+				-2.3
5,254,062	+				+1.0
5,254,062	+				-0.1
5,254,063	-				-1.0
5,254,063	-				+0.0
5,254,063	-				+1.6
5,254,063	-				+0.6
5,254,063	-				-0.2
5,254,063	-				+0.4
5,254,063	-				+0.6
5,254,063	-				-0.4
5,254,063	-				+0.0
5,254,063	-				+0.6
5,254,066	+				-0.8
5,254,066	+				-1.0
5,254,066	+				-1.7
5,254,066	+				-2.1
5,254,067	-				-1.8
5,254,067	-				-2.3
5,254,112	+				-2.0
5,254,112	+				-2.3
5,254,112	+				-0.7
5,254,112	+				-2.3
5,254,112	+				+1.1
5,254,113	-				+1.6
5,254,113	-				-1.0
5,254,113	-				+0.0
5,254,113	-				-1.5
5,254,113	-				+0.5
5,254,117	+				-2.1
5,254,117	+				-0.0
5,254,117	+				+1.2
5,254,117	+				-0.5
5,254,117	+				+0.0
5,254,118	-				-0.0
5,254,118	-				+0.8
5,254,118	-				-0.9
5,254,118	-				-0.7
5,254,125	-				+1.7
5,254,125	-				-1.8
5,254,169	-		PFLU_RS31055	0.12	+1.2
5,254,222	-		PFLU_RS31055	0.22	+0.6
5,254,222	-		PFLU_RS31055	0.22	+1.3
5,254,244	+		PFLU_RS31055	0.26	-2.2
5,254,244	+		PFLU_RS31055	0.26	+0.4
5,254,244	+		PFLU_RS31055	0.26	-1.7
5,254,244	+		PFLU_RS31055	0.26	-0.7
5,254,244	+		PFLU_RS31055	0.26	+0.0
5,254,245	-		PFLU_RS31055	0.26	-1.4
5,254,245	-		PFLU_RS31055	0.26	-0.7
5,254,273	+		PFLU_RS31055	0.32	-0.4
5,254,274	-		PFLU_RS31055	0.32	+0.7
5,254,331	+		PFLU_RS31055	0.43	-0.9
5,254,331	+		PFLU_RS31055	0.43	+0.6
5,254,331	+		PFLU_RS31055	0.43	+0.5
5,254,332	-		PFLU_RS31055	0.43	-1.2
5,254,332	-		PFLU_RS31055	0.43	-0.8
5,254,332	-		PFLU_RS31055	0.43	+2.8
5,254,346	+		PFLU_RS31055	0.45	+2.5
5,254,346	+		PFLU_RS31055	0.45	-0.4
5,254,346	+		PFLU_RS31055	0.45	+0.8
5,254,346	+		PFLU_RS31055	0.45	-0.3
5,254,347	-		PFLU_RS31055	0.46	+1.0
5,254,347	-		PFLU_RS31055	0.46	-0.2
5,254,347	-		PFLU_RS31055	0.46	-0.7
5,254,347	-		PFLU_RS31055	0.46	-1.5
5,254,352	+		PFLU_RS31055	0.47	-0.5
5,254,352	+		PFLU_RS31055	0.47	-1.2
5,254,352	+		PFLU_RS31055	0.47	+1.4
5,254,352	+		PFLU_RS31055	0.47	+1.9
5,254,352	+		PFLU_RS31055	0.47	-0.0
5,254,352	+		PFLU_RS31055	0.47	-1.7
5,254,352	+		PFLU_RS31055	0.47	+0.8
5,254,352	+		PFLU_RS31055	0.47	+0.2
5,254,353	-		PFLU_RS31055	0.47	-1.5
5,254,353	-		PFLU_RS31055	0.47	-1.9
5,254,353	-		PFLU_RS31055	0.47	-0.7
5,254,353	-		PFLU_RS31055	0.47	+1.1
5,254,372	-		PFLU_RS31055	0.50	-0.4
5,254,378	+		PFLU_RS31055	0.51	-1.2
5,254,379	-		PFLU_RS31055	0.52	+1.4
5,254,379	-		PFLU_RS31055	0.52	-0.1
5,254,379	-		PFLU_RS31055	0.52	+0.1
5,254,379	-		PFLU_RS31055	0.52	-0.9
5,254,379	-		PFLU_RS31055	0.52	+0.4
5,254,452	+		PFLU_RS31055	0.65	-1.7
5,254,452	+		PFLU_RS31055	0.65	+0.6
5,254,452	+		PFLU_RS31055	0.65	+0.1
5,254,453	-		PFLU_RS31055	0.65	+0.9
5,254,453	-		PFLU_RS31055	0.65	+0.3
5,254,453	-		PFLU_RS31055	0.65	-2.8
5,254,453	-		PFLU_RS31055	0.65	+1.7
5,254,535	+		PFLU_RS31055	0.81	-1.1
5,254,535	+		PFLU_RS31055	0.81	+0.5
5,254,535	+		PFLU_RS31055	0.81	+1.6
5,254,535	+		PFLU_RS31055	0.81	+2.4
5,254,535	+		PFLU_RS31055	0.81	-0.8
5,254,535	+		PFLU_RS31055	0.81	-1.6
5,254,535	+		PFLU_RS31055	0.81	+1.6
5,254,536	-		PFLU_RS31055	0.81	+0.2
5,254,536	-		PFLU_RS31055	0.81	-0.2
5,254,536	-		PFLU_RS31055	0.81	+0.9
5,254,536	-		PFLU_RS31055	0.81	-1.7
5,254,536	-		PFLU_RS31055	0.81	-0.2
5,254,536	-		PFLU_RS31055	0.81	-1.2
5,254,539	+		PFLU_RS31055	0.82	-0.3
5,254,539	+		PFLU_RS31055	0.82	-0.4
5,254,539	+		PFLU_RS31055	0.82	+1.5
5,254,539	+		PFLU_RS31055	0.82	+1.8
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