Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08880

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03915 and MMP_RS03920 are separated by 177 nucleotidesMMP_RS03920 and MMP_RS08880 are separated by 429 nucleotidesMMP_RS08880 and MMP_RS03930 are separated by 46 nucleotides MMP_RS03915: MMP_RS03915 - DUF2080 family transposase-associated protein, at 742,371 to 742,568 _RS03915 MMP_RS03920: MMP_RS03920 - transcriptional regulator, at 742,746 to 743,045 _RS03920 MMP_RS08880: MMP_RS08880 - hypothetical protein, at 743,475 to 744,809 _RS08880 MMP_RS03930: MMP_RS03930 - DUF4263 domain-containing protein, at 744,856 to 746,163 _RS03930 Position (kb) 743 744 745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 742.568 kb on - strandat 742.568 kb on - strandat 742.573 kb on - strandat 742.574 kb on + strandat 742.574 kb on + strandat 742.615 kb on - strandat 742.697 kb on - strandat 742.698 kb on + strandat 742.714 kb on - strandat 743.133 kb on - strandat 743.133 kb on - strandat 743.211 kb on - strandat 743.227 kb on - strandat 743.227 kb on - strandat 743.227 kb on - strandat 743.228 kb on + strandat 743.254 kb on - strandat 743.259 kb on - strandat 743.260 kb on + strandat 743.304 kb on - strandat 743.306 kb on - strandat 743.369 kb on - strandat 743.416 kb on - strandat 743.417 kb on + strandat 743.449 kb on + strandat 743.552 kb on - strandat 743.553 kb on + strandat 743.663 kb on - strand, within MMP_RS08880at 743.670 kb on - strand, within MMP_RS08880at 743.701 kb on - strand, within MMP_RS08880at 743.733 kb on - strand, within MMP_RS08880at 743.771 kb on - strand, within MMP_RS08880at 743.834 kb on - strand, within MMP_RS08880at 743.847 kb on + strand, within MMP_RS08880at 743.856 kb on - strand, within MMP_RS08880at 743.915 kb on + strand, within MMP_RS08880at 743.945 kb on - strand, within MMP_RS08880at 743.947 kb on - strand, within MMP_RS08880at 743.964 kb on + strand, within MMP_RS08880at 743.964 kb on + strand, within MMP_RS08880at 743.966 kb on + strand, within MMP_RS08880at 744.002 kb on + strand, within MMP_RS08880at 744.049 kb on - strand, within MMP_RS08880at 744.050 kb on + strand, within MMP_RS08880at 744.072 kb on + strand, within MMP_RS08880at 744.133 kb on - strand, within MMP_RS08880at 744.233 kb on + strand, within MMP_RS08880at 744.336 kb on + strand, within MMP_RS08880at 744.366 kb on + strand, within MMP_RS08880at 744.366 kb on + strand, within MMP_RS08880at 744.379 kb on - strand, within MMP_RS08880at 744.468 kb on - strand, within MMP_RS08880at 744.470 kb on - strand, within MMP_RS08880at 744.470 kb on - strand, within MMP_RS08880at 744.470 kb on - strand, within MMP_RS08880at 744.471 kb on + strand, within MMP_RS08880at 744.471 kb on + strand, within MMP_RS08880at 744.471 kb on + strand, within MMP_RS08880at 744.473 kb on - strand, within MMP_RS08880at 744.474 kb on + strand, within MMP_RS08880at 744.535 kb on + strand, within MMP_RS08880at 744.595 kb on - strand, within MMP_RS08880at 744.595 kb on - strand, within MMP_RS08880at 744.635 kb on - strand, within MMP_RS08880at 744.691 kb on - strandat 744.731 kb on - strandat 744.736 kb on - strandat 744.914 kb on + strandat 744.928 kb on - strandat 745.017 kb on - strand, within MMP_RS03930at 745.023 kb on + strand, within MMP_RS03930at 745.110 kb on + strand, within MMP_RS03930at 745.114 kb on + strand, within MMP_RS03930at 745.116 kb on + strand, within MMP_RS03930at 745.134 kb on - strand, within MMP_RS03930at 745.135 kb on + strand, within MMP_RS03930at 745.140 kb on - strand, within MMP_RS03930at 745.244 kb on - strand, within MMP_RS03930at 745.249 kb on + strand, within MMP_RS03930at 745.255 kb on - strand, within MMP_RS03930at 745.255 kb on - strand, within MMP_RS03930at 745.329 kb on - strand, within MMP_RS03930at 745.330 kb on + strand, within MMP_RS03930at 745.333 kb on - strand, within MMP_RS03930at 745.333 kb on - strand, within MMP_RS03930at 745.333 kb on - strand, within MMP_RS03930at 745.334 kb on + strand, within MMP_RS03930at 745.334 kb on + strand, within MMP_RS03930at 745.334 kb on + strand, within MMP_RS03930at 745.336 kb on - strand, within MMP_RS03930at 745.336 kb on - strand, within MMP_RS03930at 745.336 kb on - strand, within MMP_RS03930at 745.337 kb on + strand, within MMP_RS03930at 745.337 kb on + strand, within MMP_RS03930at 745.339 kb on + strand, within MMP_RS03930at 745.339 kb on + strand, within MMP_RS03930at 745.341 kb on - strand, within MMP_RS03930at 745.342 kb on + strand, within MMP_RS03930at 745.343 kb on - strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.520 kb on + strand, within MMP_RS03930at 745.622 kb on - strand, within MMP_RS03930at 745.669 kb on - strand, within MMP_RS03930at 745.670 kb on + strand, within MMP_RS03930at 745.670 kb on + strand, within MMP_RS03930at 745.721 kb on + strand, within MMP_RS03930

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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742,568 - +0.7
742,568 - +3.0
742,573 - -0.2
742,574 + +0.1
742,574 + +0.2
742,615 - -0.5
742,697 - -2.9
742,698 + -3.8
742,714 - -3.0
743,133 - -0.1
743,133 - +0.4
743,211 - -0.5
743,227 - -0.8
743,227 - -0.4
743,227 - +0.4
743,228 + -0.1
743,254 - -0.1
743,259 - +0.4
743,260 + -0.9
743,304 - +0.6
743,306 - +0.0
743,369 - +0.2
743,416 - -0.1
743,417 + +0.6
743,449 + +0.6
743,552 - +0.4
743,553 + -0.1
743,663 - MMP_RS08880 0.14 -0.3
743,670 - MMP_RS08880 0.15 -0.4
743,701 - MMP_RS08880 0.17 +0.6
743,733 - MMP_RS08880 0.19 -0.1
743,771 - MMP_RS08880 0.22 -0.8
743,834 - MMP_RS08880 0.27 -1.5
743,847 + MMP_RS08880 0.28 -0.9
743,856 - MMP_RS08880 0.29 +0.2
743,915 + MMP_RS08880 0.33 +0.5
743,945 - MMP_RS08880 0.35 -0.3
743,947 - MMP_RS08880 0.35 +0.7
743,964 + MMP_RS08880 0.37 +0.1
743,964 + MMP_RS08880 0.37 -0.5
743,966 + MMP_RS08880 0.37 +0.3
744,002 + MMP_RS08880 0.39 +0.3
744,049 - MMP_RS08880 0.43 +0.5
744,050 + MMP_RS08880 0.43 +0.4
744,072 + MMP_RS08880 0.45 -1.0
744,133 - MMP_RS08880 0.49 -1.1
744,233 + MMP_RS08880 0.57 -0.4
744,336 + MMP_RS08880 0.64 -0.8
744,366 + MMP_RS08880 0.67 -0.3
744,366 + MMP_RS08880 0.67 +0.1
744,379 - MMP_RS08880 0.68 -0.0
744,468 - MMP_RS08880 0.74 -0.1
744,470 - MMP_RS08880 0.75 -0.2
744,470 - MMP_RS08880 0.75 +0.0
744,470 - MMP_RS08880 0.75 +0.2
744,471 + MMP_RS08880 0.75 -0.0
744,471 + MMP_RS08880 0.75 -0.2
744,471 + MMP_RS08880 0.75 +0.3
744,473 - MMP_RS08880 0.75 +0.4
744,474 + MMP_RS08880 0.75 -0.7
744,535 + MMP_RS08880 0.79 +0.1
744,595 - MMP_RS08880 0.84 +0.1
744,595 - MMP_RS08880 0.84 +0.6
744,635 - MMP_RS08880 0.87 -0.8
744,691 - +0.3
744,731 - -0.1
744,736 - -0.7
744,914 + -0.2
744,928 - +0.6
745,017 - MMP_RS03930 0.12 +0.1
745,023 + MMP_RS03930 0.13 +0.2
745,110 + MMP_RS03930 0.19 +0.5
745,114 + MMP_RS03930 0.20 +0.1
745,116 + MMP_RS03930 0.20 +0.3
745,134 - MMP_RS03930 0.21 -0.2
745,135 + MMP_RS03930 0.21 -0.5
745,140 - MMP_RS03930 0.22 -0.0
745,244 - MMP_RS03930 0.30 -0.2
745,249 + MMP_RS03930 0.30 -0.0
745,255 - MMP_RS03930 0.31 +0.0
745,255 - MMP_RS03930 0.31 -0.1
745,329 - MMP_RS03930 0.36 -1.6
745,330 + MMP_RS03930 0.36 -0.5
745,333 - MMP_RS03930 0.36 -0.6
745,333 - MMP_RS03930 0.36 +0.1
745,333 - MMP_RS03930 0.36 +0.3
745,334 + MMP_RS03930 0.37 -0.4
745,334 + MMP_RS03930 0.37 -0.8
745,334 + MMP_RS03930 0.37 -0.0
745,336 - MMP_RS03930 0.37 -1.4
745,336 - MMP_RS03930 0.37 -0.2
745,336 - MMP_RS03930 0.37 +0.1
745,337 + MMP_RS03930 0.37 -0.1
745,337 + MMP_RS03930 0.37 +0.4
745,339 + MMP_RS03930 0.37 -0.2
745,339 + MMP_RS03930 0.37 +0.2
745,341 - MMP_RS03930 0.37 +0.2
745,342 + MMP_RS03930 0.37 -1.7
745,343 - MMP_RS03930 0.37 -0.4
745,344 + MMP_RS03930 0.37 -0.4
745,344 + MMP_RS03930 0.37 -0.1
745,344 + MMP_RS03930 0.37 +0.2
745,344 + MMP_RS03930 0.37 -0.4
745,520 + MMP_RS03930 0.51 -0.5
745,622 - MMP_RS03930 0.59 -0.2
745,669 - MMP_RS03930 0.62 +3.7
745,670 + MMP_RS03930 0.62 +0.3
745,670 + MMP_RS03930 0.62 -0.6
745,721 + MMP_RS03930 0.66 +0.1

Or see this region's nucleotide sequence