Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01845 and MMP_RS01850 are separated by 124 nucleotides MMP_RS01850 and MMP_RS01855 are separated by 42 nucleotides
MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472
_RS01845
MMP_RS01850: MMP_RS01850 - phosphate ABC transporter substrate-binding protein, at 341,597 to 342,424
_RS01850
MMP_RS01855: MMP_RS01855 - 2-hydroxyacyl-CoA dehydratase family protein, at 342,467 to 343,588
_RS01855
Position (kb) 341
342
343 Strain fitness (log2 ratio) -1
0
1
2
3 at 340.708 kb on - strand, within MMP_RS01845 at 340.711 kb on + strand, within MMP_RS01845 at 340.714 kb on + strand, within MMP_RS01845 at 340.726 kb on - strand, within MMP_RS01845 at 340.763 kb on - strand, within MMP_RS01845 at 340.763 kb on - strand, within MMP_RS01845 at 340.769 kb on - strand, within MMP_RS01845 at 340.769 kb on - strand, within MMP_RS01845 at 340.774 kb on + strand, within MMP_RS01845 at 340.781 kb on - strand, within MMP_RS01845 at 340.790 kb on - strand, within MMP_RS01845 at 340.791 kb on + strand, within MMP_RS01845 at 340.848 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.889 kb on + strand, within MMP_RS01845 at 340.918 kb on - strand, within MMP_RS01845 at 341.012 kb on - strand, within MMP_RS01845 at 341.044 kb on + strand, within MMP_RS01845 at 341.070 kb on - strand, within MMP_RS01845 at 341.132 kb on + strand, within MMP_RS01845 at 341.133 kb on - strand, within MMP_RS01845 at 341.139 kb on - strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.142 kb on + strand, within MMP_RS01845 at 341.181 kb on + strand, within MMP_RS01845 at 341.218 kb on - strand, within MMP_RS01845 at 341.219 kb on + strand, within MMP_RS01845 at 341.221 kb on + strand, within MMP_RS01845 at 341.249 kb on + strand, within MMP_RS01845 at 341.330 kb on - strand, within MMP_RS01845 at 341.330 kb on - strand, within MMP_RS01845 at 341.472 kb on - strand at 341.472 kb on - strand at 341.475 kb on - strand at 341.475 kb on - strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.501 kb on - strand at 341.501 kb on - strand at 341.603 kb on - strand at 341.658 kb on - strand at 341.780 kb on - strand, within MMP_RS01850 at 341.780 kb on - strand, within MMP_RS01850 at 341.781 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.910 kb on + strand, within MMP_RS01850 at 341.942 kb on + strand, within MMP_RS01850 at 341.972 kb on - strand, within MMP_RS01850 at 342.047 kb on + strand, within MMP_RS01850 at 342.247 kb on - strand, within MMP_RS01850 at 342.265 kb on + strand, within MMP_RS01850 at 342.393 kb on + strand at 342.627 kb on - strand, within MMP_RS01855 at 342.628 kb on + strand, within MMP_RS01855 at 342.631 kb on + strand, within MMP_RS01855 at 342.632 kb on - strand, within MMP_RS01855 at 342.727 kb on + strand, within MMP_RS01855 at 342.823 kb on - strand, within MMP_RS01855 at 342.832 kb on - strand, within MMP_RS01855 at 342.833 kb on + strand, within MMP_RS01855 at 342.971 kb on - strand, within MMP_RS01855 at 342.972 kb on + strand, within MMP_RS01855 at 343.318 kb on + strand, within MMP_RS01855 at 343.403 kb on - strand, within MMP_RS01855
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE remove 340,708 - MMP_RS01845 0.13 +0.4 340,711 + MMP_RS01845 0.14 +0.2 340,714 + MMP_RS01845 0.14 -0.9 340,726 - MMP_RS01845 0.15 -0.2 340,763 - MMP_RS01845 0.20 -0.0 340,763 - MMP_RS01845 0.20 +0.7 340,769 - MMP_RS01845 0.20 +0.7 340,769 - MMP_RS01845 0.20 +0.3 340,774 + MMP_RS01845 0.21 +0.4 340,781 - MMP_RS01845 0.22 +0.2 340,790 - MMP_RS01845 0.23 -0.4 340,791 + MMP_RS01845 0.23 +0.3 340,848 - MMP_RS01845 0.29 +0.7 340,888 - MMP_RS01845 0.34 -0.4 340,888 - MMP_RS01845 0.34 +0.4 340,888 - MMP_RS01845 0.34 +3.2 340,889 + MMP_RS01845 0.34 +3.5 340,918 - MMP_RS01845 0.37 +0.4 341,012 - MMP_RS01845 0.48 +0.1 341,044 + MMP_RS01845 0.51 +0.2 341,070 - MMP_RS01845 0.54 +0.6 341,132 + MMP_RS01845 0.61 -0.5 341,133 - MMP_RS01845 0.61 -0.1 341,139 - MMP_RS01845 0.62 +0.2 341,140 + MMP_RS01845 0.62 +0.2 341,140 + MMP_RS01845 0.62 -0.6 341,140 + MMP_RS01845 0.62 -0.4 341,142 + MMP_RS01845 0.62 -0.1 341,181 + MMP_RS01845 0.67 +0.3 341,218 - MMP_RS01845 0.71 +2.8 341,219 + MMP_RS01845 0.71 +0.2 341,221 + MMP_RS01845 0.71 -0.8 341,249 + MMP_RS01845 0.75 -0.7 341,330 - MMP_RS01845 0.84 +0.8 341,330 - MMP_RS01845 0.84 +0.3 341,472 - +0.0 341,472 - +0.0 341,475 - +0.4 341,475 - -0.7 341,476 + +0.5 341,476 + +0.7 341,476 + -0.4 341,476 + -0.2 341,501 - +0.4 341,501 - +0.4 341,603 - +0.5 341,658 - +3.3 341,780 - MMP_RS01850 0.22 +0.2 341,780 - MMP_RS01850 0.22 +0.5 341,781 + MMP_RS01850 0.22 +3.7 341,806 + MMP_RS01850 0.25 -0.0 341,806 + MMP_RS01850 0.25 -0.8 341,910 + MMP_RS01850 0.38 +0.9 341,942 + MMP_RS01850 0.42 +0.1 341,972 - MMP_RS01850 0.45 +0.4 342,047 + MMP_RS01850 0.54 -1.0 342,247 - MMP_RS01850 0.79 -0.3 342,265 + MMP_RS01850 0.81 +0.6 342,393 + +0.4 342,627 - MMP_RS01855 0.14 +0.2 342,628 + MMP_RS01855 0.14 -0.2 342,631 + MMP_RS01855 0.15 +1.0 342,632 - MMP_RS01855 0.15 +0.2 342,727 + MMP_RS01855 0.23 +0.6 342,823 - MMP_RS01855 0.32 +0.6 342,832 - MMP_RS01855 0.33 -0.1 342,833 + MMP_RS01855 0.33 -0.1 342,971 - MMP_RS01855 0.45 +0.4 342,972 + MMP_RS01855 0.45 +0.0 343,318 + MMP_RS01855 0.76 +0.1 343,403 - MMP_RS01855 0.83 -0.3
Or see this region's nucleotide sequence