Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01745

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01740 and MMP_RS01745 are separated by 135 nucleotidesMMP_RS01745 and MMP_RS01750 are separated by 109 nucleotidesMMP_RS01750 and MMP_RS01755 are separated by 14 nucleotides MMP_RS01740: MMP_RS01740 - methionine--tRNA ligase, at 322,398 to 324,389 _RS01740 MMP_RS01745: MMP_RS01745 - AMP phosphorylase, at 324,525 to 326,042 _RS01745 MMP_RS01750: MMP_RS01750 - DUF63 family protein, at 326,152 to 326,958 _RS01750 MMP_RS01755: MMP_RS01755 - DUF2097 domain-containing protein, at 326,973 to 327,263 _RS01755 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 323.802 kb on - strandat 323.842 kb on - strandat 323.945 kb on + strandat 323.945 kb on + strandat 323.948 kb on - strandat 323.970 kb on + strandat 324.212 kb on + strandat 324.220 kb on + strandat 324.332 kb on - strandat 324.337 kb on - strandat 324.337 kb on - strandat 324.390 kb on - strandat 324.406 kb on - strandat 324.459 kb on - strandat 324.468 kb on - strandat 324.485 kb on - strandat 324.550 kb on - strandat 324.637 kb on - strandat 324.767 kb on + strand, within MMP_RS01745at 324.918 kb on - strand, within MMP_RS01745at 324.920 kb on - strand, within MMP_RS01745at 325.025 kb on - strand, within MMP_RS01745at 325.072 kb on - strand, within MMP_RS01745at 325.469 kb on + strand, within MMP_RS01745at 325.661 kb on + strand, within MMP_RS01745at 325.929 kb on - strandat 325.972 kb on - strandat 325.972 kb on - strandat 326.019 kb on + strandat 326.058 kb on - strandat 326.060 kb on - strandat 326.060 kb on - strandat 326.061 kb on + strandat 326.061 kb on + strandat 326.065 kb on + strandat 326.081 kb on + strandat 326.087 kb on + strandat 326.116 kb on + strandat 326.131 kb on + strandat 326.194 kb on - strandat 326.195 kb on + strandat 326.227 kb on + strandat 326.268 kb on + strand, within MMP_RS01750at 326.338 kb on + strand, within MMP_RS01750at 326.445 kb on - strand, within MMP_RS01750at 326.445 kb on - strand, within MMP_RS01750at 326.449 kb on - strand, within MMP_RS01750at 326.450 kb on + strand, within MMP_RS01750at 326.501 kb on + strand, within MMP_RS01750at 326.501 kb on + strand, within MMP_RS01750at 326.505 kb on + strand, within MMP_RS01750at 326.585 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.590 kb on - strand, within MMP_RS01750at 326.591 kb on + strand, within MMP_RS01750at 326.591 kb on + strand, within MMP_RS01750at 326.591 kb on + strand, within MMP_RS01750at 326.603 kb on - strand, within MMP_RS01750at 326.613 kb on + strand, within MMP_RS01750at 326.617 kb on - strand, within MMP_RS01750at 326.620 kb on - strand, within MMP_RS01750at 326.620 kb on - strand, within MMP_RS01750at 326.621 kb on + strand, within MMP_RS01750at 326.633 kb on + strand, within MMP_RS01750at 326.837 kb on - strand, within MMP_RS01750at 326.881 kb on + strandat 327.036 kb on - strand, within MMP_RS01755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
remove
323,802 - -2.9
323,842 - -1.3
323,945 + +0.9
323,945 + -0.3
323,948 - -1.5
323,970 + -0.4
324,212 + -4.0
324,220 + -2.4
324,332 - -3.6
324,337 - -0.7
324,337 - -0.5
324,390 - -0.7
324,406 - -0.3
324,459 - -0.8
324,468 - -0.6
324,485 - -1.7
324,550 - -1.5
324,637 - -2.2
324,767 + MMP_RS01745 0.16 -2.6
324,918 - MMP_RS01745 0.26 -2.6
324,920 - MMP_RS01745 0.26 -2.1
325,025 - MMP_RS01745 0.33 -3.7
325,072 - MMP_RS01745 0.36 +0.4
325,469 + MMP_RS01745 0.62 -1.4
325,661 + MMP_RS01745 0.75 -1.7
325,929 - -2.1
325,972 - -3.4
325,972 - -1.6
326,019 + -0.9
326,058 - +3.7
326,060 - -0.1
326,060 - -0.3
326,061 + -1.3
326,061 + -0.8
326,065 + -0.7
326,081 + -0.3
326,087 + -0.8
326,116 + -1.3
326,131 + -0.2
326,194 - -1.5
326,195 + -0.5
326,227 + -1.4
326,268 + MMP_RS01750 0.14 -1.7
326,338 + MMP_RS01750 0.23 -0.5
326,445 - MMP_RS01750 0.36 -0.1
326,445 - MMP_RS01750 0.36 -0.3
326,449 - MMP_RS01750 0.37 -1.8
326,450 + MMP_RS01750 0.37 -1.0
326,501 + MMP_RS01750 0.43 -1.2
326,501 + MMP_RS01750 0.43 -0.6
326,505 + MMP_RS01750 0.44 -0.4
326,585 - MMP_RS01750 0.54 -1.4
326,590 - MMP_RS01750 0.54 -2.8
326,590 - MMP_RS01750 0.54 -0.8
326,590 - MMP_RS01750 0.54 -1.1
326,590 - MMP_RS01750 0.54 -0.3
326,590 - MMP_RS01750 0.54 -1.3
326,591 + MMP_RS01750 0.54 -1.1
326,591 + MMP_RS01750 0.54 -0.4
326,591 + MMP_RS01750 0.54 -1.1
326,603 - MMP_RS01750 0.56 -1.7
326,613 + MMP_RS01750 0.57 -1.0
326,617 - MMP_RS01750 0.58 -1.7
326,620 - MMP_RS01750 0.58 -1.3
326,620 - MMP_RS01750 0.58 -2.0
326,621 + MMP_RS01750 0.58 -0.5
326,633 + MMP_RS01750 0.60 -1.2
326,837 - MMP_RS01750 0.85 -0.8
326,881 + -0.4
327,036 - MMP_RS01755 0.22 -3.6

Or see this region's nucleotide sequence