Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01045

Experiment: formate McAA riboflavin dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01040 and MMJJ_RS09250 are separated by 4 nucleotidesMMJJ_RS09250 and MMJJ_RS01045 are separated by 122 nucleotidesMMJJ_RS01045 and MMJJ_RS01050 are separated by 12 nucleotides MMJJ_RS01040: MMJJ_RS01040 - DUF4013 domain-containing protein, at 202,790 to 203,407 _RS01040 MMJJ_RS09250: MMJJ_RS09250 - hypothetical protein, at 203,412 to 203,669 _RS09250 MMJJ_RS01045: MMJJ_RS01045 - ABC transporter permease, at 203,792 to 205,015 _RS01045 MMJJ_RS01050: MMJJ_RS01050 - COG1361 S-layer family protein, at 205,028 to 206,287 _RS01050 Position (kb) 203 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2at 202.803 kb on + strandat 202.831 kb on + strandat 202.831 kb on + strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.834 kb on + strandat 202.835 kb on - strandat 202.835 kb on - strandat 202.836 kb on + strandat 202.877 kb on - strand, within MMJJ_RS01040at 202.890 kb on + strand, within MMJJ_RS01040at 202.893 kb on - strand, within MMJJ_RS01040at 203.015 kb on + strand, within MMJJ_RS01040at 203.020 kb on + strand, within MMJJ_RS01040at 203.021 kb on - strand, within MMJJ_RS01040at 203.074 kb on + strand, within MMJJ_RS01040at 203.153 kb on + strand, within MMJJ_RS01040at 203.153 kb on + strand, within MMJJ_RS01040at 203.154 kb on - strand, within MMJJ_RS01040at 203.155 kb on + strand, within MMJJ_RS01040at 203.155 kb on + strand, within MMJJ_RS01040at 203.179 kb on - strand, within MMJJ_RS01040at 203.220 kb on + strand, within MMJJ_RS01040at 203.237 kb on - strand, within MMJJ_RS01040at 203.240 kb on - strand, within MMJJ_RS01040at 203.313 kb on + strand, within MMJJ_RS01040at 203.322 kb on + strand, within MMJJ_RS01040at 203.362 kb on - strandat 203.363 kb on + strandat 203.364 kb on - strandat 203.453 kb on + strand, within MMJJ_RS09250at 203.453 kb on + strand, within MMJJ_RS09250at 203.474 kb on - strand, within MMJJ_RS09250at 203.480 kb on - strand, within MMJJ_RS09250at 203.485 kb on - strand, within MMJJ_RS09250at 203.564 kb on + strand, within MMJJ_RS09250at 203.608 kb on - strand, within MMJJ_RS09250at 203.667 kb on - strandat 203.668 kb on + strandat 203.766 kb on + strandat 203.781 kb on + strandat 203.784 kb on + strandat 203.789 kb on - strandat 203.803 kb on - strandat 203.838 kb on - strandat 203.838 kb on - strandat 203.858 kb on - strandat 203.873 kb on - strandat 203.874 kb on + strandat 203.916 kb on - strand, within MMJJ_RS01045at 203.948 kb on - strand, within MMJJ_RS01045at 203.949 kb on + strand, within MMJJ_RS01045at 203.951 kb on - strand, within MMJJ_RS01045at 203.951 kb on - strand, within MMJJ_RS01045at 203.951 kb on - strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.975 kb on - strand, within MMJJ_RS01045at 204.019 kb on - strand, within MMJJ_RS01045at 204.153 kb on + strand, within MMJJ_RS01045at 204.205 kb on - strand, within MMJJ_RS01045at 204.326 kb on - strand, within MMJJ_RS01045at 204.327 kb on + strand, within MMJJ_RS01045at 204.327 kb on + strand, within MMJJ_RS01045at 204.361 kb on + strand, within MMJJ_RS01045at 204.482 kb on - strand, within MMJJ_RS01045at 204.483 kb on + strand, within MMJJ_RS01045at 204.505 kb on - strand, within MMJJ_RS01045at 204.537 kb on + strand, within MMJJ_RS01045at 204.722 kb on - strand, within MMJJ_RS01045at 204.739 kb on + strand, within MMJJ_RS01045at 204.739 kb on + strand, within MMJJ_RS01045at 204.743 kb on + strand, within MMJJ_RS01045at 204.753 kb on + strand, within MMJJ_RS01045at 204.770 kb on - strand, within MMJJ_RS01045at 204.770 kb on - strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.826 kb on + strand, within MMJJ_RS01045at 204.827 kb on - strand, within MMJJ_RS01045at 204.828 kb on + strand, within MMJJ_RS01045at 204.836 kb on - strand, within MMJJ_RS01045at 204.907 kb on - strandat 204.908 kb on + strandat 204.908 kb on + strandat 204.944 kb on + strandat 204.960 kb on + strandat 205.073 kb on - strandat 205.074 kb on + strandat 205.104 kb on + strandat 205.124 kb on - strandat 205.170 kb on - strand, within MMJJ_RS01050at 205.170 kb on - strand, within MMJJ_RS01050at 205.171 kb on + strand, within MMJJ_RS01050at 205.171 kb on + strand, within MMJJ_RS01050at 205.174 kb on - strand, within MMJJ_RS01050at 205.175 kb on + strand, within MMJJ_RS01050at 205.218 kb on + strand, within MMJJ_RS01050at 205.245 kb on - strand, within MMJJ_RS01050at 205.245 kb on - strand, within MMJJ_RS01050at 205.245 kb on - strand, within MMJJ_RS01050at 205.246 kb on + strand, within MMJJ_RS01050at 205.246 kb on + strand, within MMJJ_RS01050at 205.248 kb on - strand, within MMJJ_RS01050at 205.248 kb on - strand, within MMJJ_RS01050at 205.249 kb on + strand, within MMJJ_RS01050at 205.249 kb on + strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.320 kb on - strand, within MMJJ_RS01050at 205.320 kb on - strand, within MMJJ_RS01050at 205.347 kb on + strand, within MMJJ_RS01050at 205.347 kb on + strand, within MMJJ_RS01050at 205.367 kb on - strand, within MMJJ_RS01050at 205.393 kb on - strand, within MMJJ_RS01050at 205.395 kb on - strand, within MMJJ_RS01050at 205.395 kb on - strand, within MMJJ_RS01050at 205.448 kb on + strand, within MMJJ_RS01050at 205.449 kb on - strand, within MMJJ_RS01050at 205.510 kb on - strand, within MMJJ_RS01050at 205.510 kb on - strand, within MMJJ_RS01050at 205.565 kb on - strand, within MMJJ_RS01050at 205.566 kb on + strand, within MMJJ_RS01050at 205.569 kb on - strand, within MMJJ_RS01050at 205.570 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.577 kb on - strand, within MMJJ_RS01050at 205.578 kb on + strand, within MMJJ_RS01050at 205.584 kb on - strand, within MMJJ_RS01050at 205.585 kb on + strand, within MMJJ_RS01050at 205.599 kb on + strand, within MMJJ_RS01050at 205.599 kb on + strand, within MMJJ_RS01050at 205.656 kb on - strand, within MMJJ_RS01050at 205.657 kb on + strand, within MMJJ_RS01050at 205.657 kb on + strand, within MMJJ_RS01050at 205.673 kb on + strand, within MMJJ_RS01050at 205.737 kb on + strand, within MMJJ_RS01050at 205.797 kb on + strand, within MMJJ_RS01050at 205.847 kb on - strand, within MMJJ_RS01050at 205.867 kb on + strand, within MMJJ_RS01050at 205.904 kb on - strand, within MMJJ_RS01050at 205.943 kb on - strand, within MMJJ_RS01050at 205.954 kb on - strand, within MMJJ_RS01050at 205.955 kb on + strand, within MMJJ_RS01050at 205.966 kb on - strand, within MMJJ_RS01050at 205.971 kb on + strand, within MMJJ_RS01050at 206.001 kb on + strand, within MMJJ_RS01050

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA riboflavin dropout
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202,803 + +0.7
202,831 + +0.1
202,831 + -0.5
202,833 - -2.0
202,833 - -0.1
202,833 - -0.3
202,833 - -0.7
202,833 - -0.7
202,834 + -0.4
202,835 - +0.6
202,835 - +0.2
202,836 + +1.7
202,877 - MMJJ_RS01040 0.14 +0.2
202,890 + MMJJ_RS01040 0.16 -0.7
202,893 - MMJJ_RS01040 0.17 +0.1
203,015 + MMJJ_RS01040 0.36 +0.9
203,020 + MMJJ_RS01040 0.37 -0.1
203,021 - MMJJ_RS01040 0.37 -0.5
203,074 + MMJJ_RS01040 0.46 +0.6
203,153 + MMJJ_RS01040 0.59 -0.2
203,153 + MMJJ_RS01040 0.59 -0.6
203,154 - MMJJ_RS01040 0.59 -0.4
203,155 + MMJJ_RS01040 0.59 -2.5
203,155 + MMJJ_RS01040 0.59 -1.4
203,179 - MMJJ_RS01040 0.63 +0.8
203,220 + MMJJ_RS01040 0.70 -0.8
203,237 - MMJJ_RS01040 0.72 +0.7
203,240 - MMJJ_RS01040 0.73 -0.6
203,313 + MMJJ_RS01040 0.85 +0.4
203,322 + MMJJ_RS01040 0.86 -0.1
203,362 - +0.9
203,363 + -1.4
203,364 - +0.2
203,453 + MMJJ_RS09250 0.16 -0.1
203,453 + MMJJ_RS09250 0.16 -0.3
203,474 - MMJJ_RS09250 0.24 -1.9
203,480 - MMJJ_RS09250 0.26 -0.7
203,485 - MMJJ_RS09250 0.28 +0.7
203,564 + MMJJ_RS09250 0.59 +0.1
203,608 - MMJJ_RS09250 0.76 -0.5
203,667 - +0.3
203,668 + +0.8
203,766 + +0.2
203,781 + -0.3
203,784 + +0.3
203,789 - +0.1
203,803 - +0.3
203,838 - -0.3
203,838 - -0.4
203,858 - -1.0
203,873 - +0.2
203,874 + +0.1
203,916 - MMJJ_RS01045 0.10 -0.1
203,948 - MMJJ_RS01045 0.13 +0.2
203,949 + MMJJ_RS01045 0.13 -0.2
203,951 - MMJJ_RS01045 0.13 +0.7
203,951 - MMJJ_RS01045 0.13 -0.7
203,951 - MMJJ_RS01045 0.13 +0.2
203,952 + MMJJ_RS01045 0.13 +0.4
203,952 + MMJJ_RS01045 0.13 -0.6
203,952 + MMJJ_RS01045 0.13 -0.0
203,952 + MMJJ_RS01045 0.13 -2.1
203,952 + MMJJ_RS01045 0.13 +0.3
203,952 + MMJJ_RS01045 0.13 -0.7
203,955 - MMJJ_RS01045 0.13 +2.7
203,955 - MMJJ_RS01045 0.13 -0.8
203,955 - MMJJ_RS01045 0.13 -0.9
203,955 - MMJJ_RS01045 0.13 -0.0
203,956 + MMJJ_RS01045 0.13 -1.3
203,956 + MMJJ_RS01045 0.13 -2.4
203,956 + MMJJ_RS01045 0.13 -0.9
203,956 + MMJJ_RS01045 0.13 +0.5
203,956 + MMJJ_RS01045 0.13 -0.6
203,956 + MMJJ_RS01045 0.13 -1.1
203,956 + MMJJ_RS01045 0.13 +1.0
203,956 + MMJJ_RS01045 0.13 +0.5
203,960 + MMJJ_RS01045 0.14 -0.5
203,960 + MMJJ_RS01045 0.14 -1.0
203,960 + MMJJ_RS01045 0.14 +0.4
203,960 + MMJJ_RS01045 0.14 +0.6
203,975 - MMJJ_RS01045 0.15 +0.4
204,019 - MMJJ_RS01045 0.19 -1.5
204,153 + MMJJ_RS01045 0.29 -0.6
204,205 - MMJJ_RS01045 0.34 +0.1
204,326 - MMJJ_RS01045 0.44 -1.3
204,327 + MMJJ_RS01045 0.44 -0.3
204,327 + MMJJ_RS01045 0.44 -0.9
204,361 + MMJJ_RS01045 0.46 -1.4
204,482 - MMJJ_RS01045 0.56 +0.3
204,483 + MMJJ_RS01045 0.56 +0.1
204,505 - MMJJ_RS01045 0.58 -0.7
204,537 + MMJJ_RS01045 0.61 -0.1
204,722 - MMJJ_RS01045 0.76 -0.5
204,739 + MMJJ_RS01045 0.77 +0.1
204,739 + MMJJ_RS01045 0.77 +0.0
204,743 + MMJJ_RS01045 0.78 -0.2
204,753 + MMJJ_RS01045 0.79 -0.7
204,770 - MMJJ_RS01045 0.80 -0.4
204,770 - MMJJ_RS01045 0.80 -0.5
204,771 + MMJJ_RS01045 0.80 +0.9
204,771 + MMJJ_RS01045 0.80 -0.3
204,771 + MMJJ_RS01045 0.80 -0.3
204,771 + MMJJ_RS01045 0.80 +0.6
204,826 + MMJJ_RS01045 0.84 +0.0
204,827 - MMJJ_RS01045 0.85 -0.8
204,828 + MMJJ_RS01045 0.85 -0.4
204,836 - MMJJ_RS01045 0.85 +0.7
204,907 - +0.0
204,908 + -0.8
204,908 + +0.1
204,944 + -0.1
204,960 + +0.0
205,073 - +0.5
205,074 + -0.6
205,104 + +1.1
205,124 - +0.4
205,170 - MMJJ_RS01050 0.11 -0.8
205,170 - MMJJ_RS01050 0.11 +0.2
205,171 + MMJJ_RS01050 0.11 +1.1
205,171 + MMJJ_RS01050 0.11 +0.5
205,174 - MMJJ_RS01050 0.12 -0.1
205,175 + MMJJ_RS01050 0.12 +0.1
205,218 + MMJJ_RS01050 0.15 +0.2
205,245 - MMJJ_RS01050 0.17 +0.1
205,245 - MMJJ_RS01050 0.17 +0.8
205,245 - MMJJ_RS01050 0.17 +0.6
205,246 + MMJJ_RS01050 0.17 +0.0
205,246 + MMJJ_RS01050 0.17 +0.2
205,248 - MMJJ_RS01050 0.17 -0.2
205,248 - MMJJ_RS01050 0.17 +0.2
205,249 + MMJJ_RS01050 0.18 -1.2
205,249 + MMJJ_RS01050 0.18 +0.3
205,314 - MMJJ_RS01050 0.23 -0.8
205,314 - MMJJ_RS01050 0.23 +0.0
205,314 - MMJJ_RS01050 0.23 -0.7
205,314 - MMJJ_RS01050 0.23 -0.3
205,314 - MMJJ_RS01050 0.23 -0.1
205,315 + MMJJ_RS01050 0.23 +1.1
205,315 + MMJJ_RS01050 0.23 -0.2
205,315 + MMJJ_RS01050 0.23 +1.3
205,320 - MMJJ_RS01050 0.23 -0.3
205,320 - MMJJ_RS01050 0.23 +0.8
205,347 + MMJJ_RS01050 0.25 +0.6
205,347 + MMJJ_RS01050 0.25 +0.1
205,367 - MMJJ_RS01050 0.27 +0.9
205,393 - MMJJ_RS01050 0.29 +1.2
205,395 - MMJJ_RS01050 0.29 +0.2
205,395 - MMJJ_RS01050 0.29 -0.9
205,448 + MMJJ_RS01050 0.33 +0.7
205,449 - MMJJ_RS01050 0.33 +0.2
205,510 - MMJJ_RS01050 0.38 -2.7
205,510 - MMJJ_RS01050 0.38 +0.2
205,565 - MMJJ_RS01050 0.43 -0.2
205,566 + MMJJ_RS01050 0.43 -0.8
205,569 - MMJJ_RS01050 0.43 +0.4
205,570 + MMJJ_RS01050 0.43 -1.0
205,574 + MMJJ_RS01050 0.43 -0.7
205,574 + MMJJ_RS01050 0.43 -0.3
205,574 + MMJJ_RS01050 0.43 +0.1
205,577 - MMJJ_RS01050 0.44 -0.1
205,578 + MMJJ_RS01050 0.44 -0.3
205,584 - MMJJ_RS01050 0.44 -1.2
205,585 + MMJJ_RS01050 0.44 -0.3
205,599 + MMJJ_RS01050 0.45 +0.5
205,599 + MMJJ_RS01050 0.45 -0.6
205,656 - MMJJ_RS01050 0.50 -0.8
205,657 + MMJJ_RS01050 0.50 -0.2
205,657 + MMJJ_RS01050 0.50 -0.7
205,673 + MMJJ_RS01050 0.51 +0.8
205,737 + MMJJ_RS01050 0.56 +0.0
205,797 + MMJJ_RS01050 0.61 -0.8
205,847 - MMJJ_RS01050 0.65 -0.1
205,867 + MMJJ_RS01050 0.67 -1.4
205,904 - MMJJ_RS01050 0.70 -0.1
205,943 - MMJJ_RS01050 0.73 +0.0
205,954 - MMJJ_RS01050 0.73 +0.6
205,955 + MMJJ_RS01050 0.74 -0.3
205,966 - MMJJ_RS01050 0.74 +0.5
205,971 + MMJJ_RS01050 0.75 +0.4
206,001 + MMJJ_RS01050 0.77 +0.2

Or see this region's nucleotide sequence