Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16615

Experiment: Recovery broth with Vancomycin from Streptomyces orientalis 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Vancomycin from Streptomyces orientalis 2e-04 mM
1,495,517	+		BBR_RS16605	0.88	+0.5
1,495,538	+		BBR_RS16605	0.89	+0.6
1,495,538	+		BBR_RS16605	0.89	-0.3
1,495,538	+		BBR_RS16605	0.89	-1.4
1,495,546	-		BBR_RS16605	0.90	-0.9
1,495,660	-				-0.2
1,495,687	+				+0.9
1,495,704	+				+0.8
1,495,772	-				+0.3
1,495,816	+				-0.9
1,495,819	-				-2.1
1,495,910	+				+0.6
1,495,910	+				-0.4
1,495,962	+		BBR_RS16610	0.14	+0.1
1,496,003	+		BBR_RS16610	0.21	+0.0
1,496,009	-		BBR_RS16610	0.22	-0.0
1,496,023	-		BBR_RS16610	0.24	-0.6
1,496,053	-		BBR_RS16610	0.29	-0.7
1,496,075	+		BBR_RS16610	0.33	-0.2
1,496,086	+		BBR_RS16610	0.35	-0.5
1,496,104	-		BBR_RS16610	0.38	-0.0
1,496,235	+		BBR_RS16610	0.60	+1.2
1,496,253	-		BBR_RS16610	0.63	-0.9
1,496,377	-		BBR_RS16610	0.84	+0.7
1,496,412	+				-0.5
1,496,472	-				-0.3
1,496,475	+				-0.1
1,496,561	-				+1.8
1,496,565	+				+0.5
1,496,569	+				+0.7
1,496,623	-		BBR_RS16615	0.11	-0.2
1,496,689	+		BBR_RS16615	0.17	-0.5
1,496,719	+		BBR_RS16615	0.19	+1.3
1,496,719	+		BBR_RS16615	0.19	-1.6
1,496,741	+		BBR_RS16615	0.21	+0.6
1,496,741	+		BBR_RS16615	0.21	-0.2
1,496,741	+		BBR_RS16615	0.21	+1.2
1,496,749	-		BBR_RS16615	0.21	-0.5
1,496,749	-		BBR_RS16615	0.21	-1.3
1,496,759	-		BBR_RS16615	0.22	-0.7
1,496,823	+		BBR_RS16615	0.27	-0.2
1,496,823	+		BBR_RS16615	0.27	+0.9
1,496,850	-		BBR_RS16615	0.29	+0.4
1,496,856	+		BBR_RS16615	0.30	-0.9
1,496,875	-		BBR_RS16615	0.31	-1.2
1,496,917	+		BBR_RS16615	0.35	-0.8
1,496,917	+		BBR_RS16615	0.35	+0.5
1,496,917	+		BBR_RS16615	0.35	-1.2
1,496,936	+		BBR_RS16615	0.36	+2.3
1,496,944	-		BBR_RS16615	0.37	-0.4
1,496,944	-		BBR_RS16615	0.37	-0.3
1,496,969	+		BBR_RS16615	0.39	+0.7
1,497,014	+		BBR_RS16615	0.42	+0.5
1,497,060	+		BBR_RS16615	0.46	-1.6
1,497,075	+		BBR_RS16615	0.47	-0.2
1,497,091	-		BBR_RS16615	0.49	-0.0
1,497,145	+		BBR_RS16615	0.53	-0.0
1,497,155	+		BBR_RS16615	0.54	+0.3
1,497,191	-		BBR_RS16615	0.57	+0.1
1,497,214	-		BBR_RS16615	0.58	-1.4
1,497,264	-		BBR_RS16615	0.62	-1.8
1,497,312	+		BBR_RS16615	0.66	-0.8
1,497,348	-		BBR_RS16615	0.69	+1.0
1,497,412	-		BBR_RS16615	0.74	+0.1
1,497,497	+		BBR_RS16615	0.81	-0.4
1,497,527	+		BBR_RS16615	0.83	+1.2
1,497,535	-		BBR_RS16615	0.84	-0.2
1,497,555	-		BBR_RS16615	0.85	+0.3
1,497,584	+		BBR_RS16615	0.88	-0.3
1,497,584	+		BBR_RS16615	0.88	-0.0
1,497,621	+				+2.9
1,497,629	-				+0.3
1,497,681	-				-0.7
1,497,692	-				-1.0
1,497,697	+				-0.2
1,497,746	-				+2.0
1,497,903	+		BBR_RS16620	0.23	+0.1
1,497,911	-		BBR_RS16620	0.24	+0.0
1,497,925	-		BBR_RS16620	0.25	+1.7
1,497,959	+		BBR_RS16620	0.30	+1.1
1,498,012	-		BBR_RS16620	0.37	-0.4
1,498,012	-		BBR_RS16620	0.37	+0.0
1,498,041	-		BBR_RS16620	0.40	+0.8
1,498,116	-		BBR_RS16620	0.50	-0.4
1,498,193	-		BBR_RS16620	0.60	+0.5
1,498,221	-		BBR_RS16620	0.63	-0.7
1,498,240	-		BBR_RS16620	0.66	-0.4
1,498,267	+		BBR_RS16620	0.69	+0.4
1,498,388	-		BBR_RS16620	0.85	-0.0
1,498,483	-				+1.4
1,498,513	+				-0.5
1,498,596	+				-0.1
1,498,646	-		BBR_RS16625	0.15	-1.3
1,498,727	-		BBR_RS16625	0.24	+1.0