Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20580

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20570 and ABZR86_RS20575 are separated by 144 nucleotidesABZR86_RS20575 and ABZR86_RS20580 are separated by 154 nucleotidesABZR86_RS20580 and ABZR86_RS20585 are separated by 43 nucleotides ABZR86_RS20570: ABZR86_RS20570 - acetyl-CoA C-acyltransferase, at 62,600 to 63,784 _RS20570 ABZR86_RS20575: ABZR86_RS20575 - hypothetical protein, at 63,929 to 64,291 _RS20575 ABZR86_RS20580: ABZR86_RS20580 - carboxyl transferase domain-containing protein, at 64,446 to 66,053 _RS20580 ABZR86_RS20585: ABZR86_RS20585 - molecular chaperone HscC, at 66,097 to 67,788 _RS20585 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1at 63.846 kb on + strandat 63.847 kb on - strandat 63.881 kb on + strandat 63.881 kb on + strandat 63.884 kb on + strandat 63.884 kb on + strandat 63.884 kb on + strandat 63.884 kb on + strandat 63.884 kb on + strandat 63.888 kb on - strandat 63.888 kb on - strandat 63.888 kb on - strandat 63.948 kb on + strandat 63.949 kb on - strandat 63.949 kb on - strandat 64.290 kb on - strandat 64.689 kb on + strand, within ABZR86_RS20580at 64.689 kb on + strand, within ABZR86_RS20580at 64.690 kb on - strand, within ABZR86_RS20580at 64.690 kb on - strand, within ABZR86_RS20580at 64.690 kb on - strand, within ABZR86_RS20580at 64.795 kb on - strand, within ABZR86_RS20580at 64.795 kb on - strand, within ABZR86_RS20580at 64.795 kb on - strand, within ABZR86_RS20580at 64.866 kb on + strand, within ABZR86_RS20580at 64.866 kb on + strand, within ABZR86_RS20580at 64.866 kb on + strand, within ABZR86_RS20580at 64.947 kb on + strand, within ABZR86_RS20580at 64.947 kb on + strand, within ABZR86_RS20580at 64.947 kb on + strand, within ABZR86_RS20580at 64.948 kb on - strand, within ABZR86_RS20580at 64.948 kb on - strand, within ABZR86_RS20580at 65.025 kb on + strand, within ABZR86_RS20580at 65.025 kb on + strand, within ABZR86_RS20580at 65.025 kb on + strand, within ABZR86_RS20580at 65.026 kb on - strand, within ABZR86_RS20580at 65.076 kb on - strand, within ABZR86_RS20580at 65.076 kb on - strand, within ABZR86_RS20580at 65.159 kb on + strand, within ABZR86_RS20580at 65.159 kb on + strand, within ABZR86_RS20580at 65.159 kb on + strand, within ABZR86_RS20580at 65.159 kb on + strand, within ABZR86_RS20580at 65.160 kb on - strand, within ABZR86_RS20580at 65.160 kb on - strand, within ABZR86_RS20580at 65.295 kb on + strand, within ABZR86_RS20580at 65.296 kb on - strand, within ABZR86_RS20580at 65.599 kb on - strand, within ABZR86_RS20580at 65.709 kb on + strand, within ABZR86_RS20580at 65.709 kb on + strand, within ABZR86_RS20580at 65.710 kb on - strand, within ABZR86_RS20580at 65.899 kb on - strandat 65.899 kb on - strandat 65.919 kb on + strandat 65.920 kb on - strandat 65.920 kb on - strandat 65.920 kb on - strandat 66.051 kb on + strandat 66.051 kb on + strandat 66.051 kb on + strandat 66.051 kb on + strandat 66.052 kb on - strandat 66.104 kb on + strandat 66.104 kb on + strandat 66.105 kb on - strandat 66.105 kb on - strandat 66.105 kb on - strandat 66.105 kb on - strandat 66.109 kb on - strandat 66.146 kb on - strandat 66.451 kb on + strand, within ABZR86_RS20585at 66.452 kb on - strand, within ABZR86_RS20585at 66.717 kb on - strand, within ABZR86_RS20585

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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63,846 + -0.6
63,847 - +0.5
63,881 + -1.3
63,881 + -0.4
63,884 + +1.7
63,884 + +1.2
63,884 + -1.2
63,884 + -0.5
63,884 + -0.4
63,888 - -0.2
63,888 - -0.5
63,888 - -1.0
63,948 + -0.3
63,949 - -0.3
63,949 - +0.4
64,290 - -0.4
64,689 + ABZR86_RS20580 0.15 +0.2
64,689 + ABZR86_RS20580 0.15 +0.6
64,690 - ABZR86_RS20580 0.15 -0.1
64,690 - ABZR86_RS20580 0.15 +1.6
64,690 - ABZR86_RS20580 0.15 +0.9
64,795 - ABZR86_RS20580 0.22 +0.3
64,795 - ABZR86_RS20580 0.22 +1.1
64,795 - ABZR86_RS20580 0.22 +1.0
64,866 + ABZR86_RS20580 0.26 -0.1
64,866 + ABZR86_RS20580 0.26 +0.4
64,866 + ABZR86_RS20580 0.26 +0.1
64,947 + ABZR86_RS20580 0.31 +0.4
64,947 + ABZR86_RS20580 0.31 -3.4
64,947 + ABZR86_RS20580 0.31 +0.2
64,948 - ABZR86_RS20580 0.31 +0.6
64,948 - ABZR86_RS20580 0.31 -0.6
65,025 + ABZR86_RS20580 0.36 +0.2
65,025 + ABZR86_RS20580 0.36 -0.1
65,025 + ABZR86_RS20580 0.36 +0.1
65,026 - ABZR86_RS20580 0.36 +0.3
65,076 - ABZR86_RS20580 0.39 -0.2
65,076 - ABZR86_RS20580 0.39 +0.3
65,159 + ABZR86_RS20580 0.44 +0.1
65,159 + ABZR86_RS20580 0.44 -0.4
65,159 + ABZR86_RS20580 0.44 +0.1
65,159 + ABZR86_RS20580 0.44 -0.5
65,160 - ABZR86_RS20580 0.44 +0.6
65,160 - ABZR86_RS20580 0.44 -0.7
65,295 + ABZR86_RS20580 0.53 +1.0
65,296 - ABZR86_RS20580 0.53 -0.1
65,599 - ABZR86_RS20580 0.72 +0.1
65,709 + ABZR86_RS20580 0.79 -0.1
65,709 + ABZR86_RS20580 0.79 -0.1
65,710 - ABZR86_RS20580 0.79 +0.0
65,899 - +0.3
65,899 - +0.2
65,919 + +0.8
65,920 - +0.4
65,920 - -0.4
65,920 - +0.6
66,051 + +0.9
66,051 + -0.0
66,051 + -0.1
66,051 + +0.0
66,052 - -0.1
66,104 + +1.4
66,104 + +0.8
66,105 - +0.4
66,105 - -0.1
66,105 - +0.2
66,105 - -0.4
66,109 - +1.5
66,146 - +0.4
66,451 + ABZR86_RS20585 0.21 +0.2
66,452 - ABZR86_RS20585 0.21 +0.0
66,717 - ABZR86_RS20585 0.37 +0.3

Or see this region's nucleotide sequence