Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09730

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09720 and ABZR86_RS09725 are separated by 2 nucleotidesABZR86_RS09725 and ABZR86_RS09730 are separated by 9 nucleotidesABZR86_RS09730 and ABZR86_RS09735 overlap by 4 nucleotidesABZR86_RS09735 and ABZR86_RS09740 are separated by 15 nucleotidesABZR86_RS09740 and ABZR86_RS09745 are separated by 246 nucleotidesABZR86_RS09745 and ABZR86_RS09750 are separated by 76 nucleotides ABZR86_RS09720: ABZR86_RS09720 - flagellar basal body rod protein FlgC, at 2,163,137 to 2,163,535 _RS09720 ABZR86_RS09725: ABZR86_RS09725 - flagellar hook capping FlgD N-terminal domain-containing protein, at 2,163,538 to 2,164,236 _RS09725 ABZR86_RS09730: ABZR86_RS09730 - flagellar hook-basal body complex protein, at 2,164,246 to 2,165,061 _RS09730 ABZR86_RS09735: ABZR86_RS09735 - hypothetical protein, at 2,165,058 to 2,165,291 _RS09735 ABZR86_RS09740: ABZR86_RS09740 - flagellar hook-basal body complex protein FliE, at 2,165,307 to 2,165,624 _RS09740 ABZR86_RS09745: ABZR86_RS09745 - tRNA-Val, at 2,165,871 to 2,165,945 _RS09745 ABZR86_RS09750: ABZR86_RS09750 - excinuclease ABC subunit UvrB, at 2,166,022 to 2,168,043 _RS09750 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -2 -1 0 1at 2163.928 kb on - strand, within ABZR86_RS09725at 2163.928 kb on - strand, within ABZR86_RS09725at 2163.938 kb on + strand, within ABZR86_RS09725at 2163.938 kb on + strand, within ABZR86_RS09725at 2163.938 kb on + strand, within ABZR86_RS09725at 2163.939 kb on - strand, within ABZR86_RS09725at 2164.048 kb on + strand, within ABZR86_RS09725at 2164.048 kb on + strand, within ABZR86_RS09725at 2164.048 kb on + strand, within ABZR86_RS09725at 2164.049 kb on - strand, within ABZR86_RS09725at 2164.049 kb on - strand, within ABZR86_RS09725at 2164.049 kb on - strand, within ABZR86_RS09725at 2164.049 kb on - strand, within ABZR86_RS09725at 2164.142 kb on + strand, within ABZR86_RS09725at 2164.142 kb on + strand, within ABZR86_RS09725at 2164.142 kb on + strand, within ABZR86_RS09725at 2164.142 kb on + strand, within ABZR86_RS09725at 2164.143 kb on - strand, within ABZR86_RS09725at 2164.234 kb on + strandat 2164.235 kb on - strandat 2164.372 kb on + strand, within ABZR86_RS09730at 2164.373 kb on - strand, within ABZR86_RS09730at 2164.373 kb on - strand, within ABZR86_RS09730at 2164.399 kb on + strand, within ABZR86_RS09730at 2164.399 kb on + strand, within ABZR86_RS09730at 2164.399 kb on + strand, within ABZR86_RS09730at 2164.399 kb on + strand, within ABZR86_RS09730at 2164.399 kb on + strand, within ABZR86_RS09730at 2164.400 kb on - strand, within ABZR86_RS09730at 2164.400 kb on - strand, within ABZR86_RS09730at 2164.400 kb on - strand, within ABZR86_RS09730at 2164.400 kb on - strand, within ABZR86_RS09730at 2164.400 kb on - strand, within ABZR86_RS09730at 2164.400 kb on - strand, within ABZR86_RS09730at 2164.525 kb on + strand, within ABZR86_RS09730at 2164.525 kb on + strand, within ABZR86_RS09730at 2164.525 kb on + strand, within ABZR86_RS09730at 2164.525 kb on + strand, within ABZR86_RS09730at 2164.526 kb on - strand, within ABZR86_RS09730at 2164.526 kb on - strand, within ABZR86_RS09730at 2164.601 kb on - strand, within ABZR86_RS09730at 2164.601 kb on - strand, within ABZR86_RS09730at 2164.620 kb on + strand, within ABZR86_RS09730at 2164.756 kb on + strand, within ABZR86_RS09730at 2164.756 kb on + strand, within ABZR86_RS09730at 2164.756 kb on + strand, within ABZR86_RS09730at 2164.756 kb on + strand, within ABZR86_RS09730at 2164.757 kb on - strand, within ABZR86_RS09730at 2164.757 kb on - strand, within ABZR86_RS09730at 2164.757 kb on - strand, within ABZR86_RS09730at 2164.757 kb on - strand, within ABZR86_RS09730at 2164.758 kb on + strand, within ABZR86_RS09730at 2164.759 kb on - strand, within ABZR86_RS09730at 2164.858 kb on + strand, within ABZR86_RS09730at 2164.858 kb on + strand, within ABZR86_RS09730at 2164.858 kb on + strand, within ABZR86_RS09730at 2164.859 kb on - strand, within ABZR86_RS09730at 2164.859 kb on - strand, within ABZR86_RS09730at 2164.859 kb on - strand, within ABZR86_RS09730at 2164.890 kb on + strand, within ABZR86_RS09730at 2164.891 kb on - strand, within ABZR86_RS09730at 2164.891 kb on - strand, within ABZR86_RS09730at 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.017 kb on + strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.018 kb on - strandat 2165.737 kb on - strandat 2165.824 kb on - strandat 2165.824 kb on - strandat 2165.867 kb on + strandat 2165.867 kb on + strandat 2165.867 kb on + strandat 2165.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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2,163,928 - ABZR86_RS09725 0.56 -0.3
2,163,928 - ABZR86_RS09725 0.56 +0.3
2,163,938 + ABZR86_RS09725 0.57 -0.1
2,163,938 + ABZR86_RS09725 0.57 +0.6
2,163,938 + ABZR86_RS09725 0.57 -0.3
2,163,939 - ABZR86_RS09725 0.57 -0.2
2,164,048 + ABZR86_RS09725 0.73 -0.6
2,164,048 + ABZR86_RS09725 0.73 -0.1
2,164,048 + ABZR86_RS09725 0.73 -0.2
2,164,049 - ABZR86_RS09725 0.73 -0.7
2,164,049 - ABZR86_RS09725 0.73 -0.5
2,164,049 - ABZR86_RS09725 0.73 +0.2
2,164,049 - ABZR86_RS09725 0.73 +0.8
2,164,142 + ABZR86_RS09725 0.86 +0.2
2,164,142 + ABZR86_RS09725 0.86 +0.8
2,164,142 + ABZR86_RS09725 0.86 +0.1
2,164,142 + ABZR86_RS09725 0.86 +1.1
2,164,143 - ABZR86_RS09725 0.87 +0.5
2,164,234 + -1.9
2,164,235 - +1.0
2,164,372 + ABZR86_RS09730 0.15 +0.5
2,164,373 - ABZR86_RS09730 0.16 -0.1
2,164,373 - ABZR86_RS09730 0.16 -0.5
2,164,399 + ABZR86_RS09730 0.19 +0.7
2,164,399 + ABZR86_RS09730 0.19 +0.1
2,164,399 + ABZR86_RS09730 0.19 -0.2
2,164,399 + ABZR86_RS09730 0.19 +0.4
2,164,399 + ABZR86_RS09730 0.19 -0.4
2,164,400 - ABZR86_RS09730 0.19 +0.4
2,164,400 - ABZR86_RS09730 0.19 -1.6
2,164,400 - ABZR86_RS09730 0.19 -0.2
2,164,400 - ABZR86_RS09730 0.19 +0.9
2,164,400 - ABZR86_RS09730 0.19 +0.7
2,164,400 - ABZR86_RS09730 0.19 +0.4
2,164,525 + ABZR86_RS09730 0.34 -0.4
2,164,525 + ABZR86_RS09730 0.34 +1.3
2,164,525 + ABZR86_RS09730 0.34 +0.1
2,164,525 + ABZR86_RS09730 0.34 -0.5
2,164,526 - ABZR86_RS09730 0.34 -0.2
2,164,526 - ABZR86_RS09730 0.34 -0.7
2,164,601 - ABZR86_RS09730 0.44 +0.3
2,164,601 - ABZR86_RS09730 0.44 -0.2
2,164,620 + ABZR86_RS09730 0.46 +0.8
2,164,756 + ABZR86_RS09730 0.62 +0.4
2,164,756 + ABZR86_RS09730 0.62 +0.1
2,164,756 + ABZR86_RS09730 0.62 -0.1
2,164,756 + ABZR86_RS09730 0.62 -0.2
2,164,757 - ABZR86_RS09730 0.63 +1.1
2,164,757 - ABZR86_RS09730 0.63 -0.1
2,164,757 - ABZR86_RS09730 0.63 +0.1
2,164,757 - ABZR86_RS09730 0.63 +0.5
2,164,758 + ABZR86_RS09730 0.63 +0.3
2,164,759 - ABZR86_RS09730 0.63 +0.0
2,164,858 + ABZR86_RS09730 0.75 -0.8
2,164,858 + ABZR86_RS09730 0.75 +0.8
2,164,858 + ABZR86_RS09730 0.75 +0.8
2,164,859 - ABZR86_RS09730 0.75 -0.3
2,164,859 - ABZR86_RS09730 0.75 +0.4
2,164,859 - ABZR86_RS09730 0.75 +0.3
2,164,890 + ABZR86_RS09730 0.79 +0.4
2,164,891 - ABZR86_RS09730 0.79 -0.3
2,164,891 - ABZR86_RS09730 0.79 +0.2
2,165,017 + +0.7
2,165,017 + -2.7
2,165,017 + +0.1
2,165,017 + +0.2
2,165,017 + +1.3
2,165,017 + -0.2
2,165,017 + -0.4
2,165,017 + +0.5
2,165,018 - +0.0
2,165,018 - -0.3
2,165,018 - +0.7
2,165,018 - -0.7
2,165,018 - +0.3
2,165,018 - +0.5
2,165,018 - +0.8
2,165,018 - -0.0
2,165,018 - +0.8
2,165,018 - -0.8
2,165,018 - -0.3
2,165,018 - +0.8
2,165,737 - +0.5
2,165,824 - +0.1
2,165,824 - -0.2
2,165,867 + +0.4
2,165,867 + -0.0
2,165,867 + +0.7
2,165,868 - +0.1

Or see this region's nucleotide sequence