Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01405

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01395 and ABZR86_RS01400 are separated by 165 nucleotidesABZR86_RS01400 and ABZR86_RS01405 are separated by 87 nucleotidesABZR86_RS01405 and ABZR86_RS01410 overlap by 1 nucleotides ABZR86_RS01395: ABZR86_RS01395 - Alanine dehydrogenase (EC 1.4.1.1) (from data), at 300,068 to 301,186 _RS01395 ABZR86_RS01400: ABZR86_RS01400 - Lrp/AsnC family transcriptional regulator, at 301,352 to 301,825 _RS01400 ABZR86_RS01405: ABZR86_RS01405 - helix-turn-helix domain-containing protein, at 301,913 to 302,569 _RS01405 ABZR86_RS01410: ABZR86_RS01410 - hypothetical protein, at 302,569 to 303,219 _RS01410 Position (kb) 301 302 303Strain fitness (log2 ratio) -2 -1 0 1at 301.038 kb on + strand, within ABZR86_RS01395at 301.038 kb on + strand, within ABZR86_RS01395at 301.039 kb on - strand, within ABZR86_RS01395at 301.039 kb on - strand, within ABZR86_RS01395at 301.039 kb on - strand, within ABZR86_RS01395at 301.039 kb on - strand, within ABZR86_RS01395at 301.039 kb on - strand, within ABZR86_RS01395at 301.039 kb on - strand, within ABZR86_RS01395at 301.106 kb on + strandat 301.106 kb on + strandat 301.107 kb on - strandat 301.250 kb on - strandat 301.347 kb on + strandat 301.520 kb on + strand, within ABZR86_RS01400at 301.524 kb on + strand, within ABZR86_RS01400at 301.524 kb on + strand, within ABZR86_RS01400at 301.524 kb on + strand, within ABZR86_RS01400at 301.524 kb on + strand, within ABZR86_RS01400at 301.524 kb on + strand, within ABZR86_RS01400at 301.524 kb on + strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.525 kb on - strand, within ABZR86_RS01400at 301.682 kb on + strand, within ABZR86_RS01400at 301.682 kb on + strand, within ABZR86_RS01400at 301.682 kb on + strand, within ABZR86_RS01400at 301.682 kb on + strand, within ABZR86_RS01400at 301.683 kb on - strand, within ABZR86_RS01400at 301.700 kb on + strand, within ABZR86_RS01400at 301.700 kb on + strand, within ABZR86_RS01400at 301.701 kb on - strand, within ABZR86_RS01400at 301.792 kb on + strandat 301.792 kb on + strandat 301.824 kb on - strandat 301.824 kb on - strandat 301.824 kb on - strandat 301.824 kb on - strandat 301.824 kb on - strandat 301.877 kb on - strandat 301.924 kb on + strandat 301.924 kb on + strandat 301.949 kb on + strandat 301.949 kb on + strandat 301.949 kb on + strandat 301.950 kb on - strandat 302.028 kb on + strand, within ABZR86_RS01405at 302.029 kb on - strand, within ABZR86_RS01405at 302.048 kb on + strand, within ABZR86_RS01405at 302.049 kb on - strand, within ABZR86_RS01405at 302.049 kb on - strand, within ABZR86_RS01405at 302.049 kb on - strand, within ABZR86_RS01405at 302.049 kb on - strand, within ABZR86_RS01405at 302.049 kb on - strand, within ABZR86_RS01405at 302.049 kb on - strand, within ABZR86_RS01405at 302.171 kb on - strand, within ABZR86_RS01405at 302.171 kb on - strand, within ABZR86_RS01405at 302.171 kb on - strand, within ABZR86_RS01405at 302.319 kb on + strand, within ABZR86_RS01405at 302.320 kb on - strand, within ABZR86_RS01405at 302.320 kb on - strand, within ABZR86_RS01405at 302.320 kb on - strand, within ABZR86_RS01405at 302.354 kb on - strand, within ABZR86_RS01405at 302.878 kb on + strand, within ABZR86_RS01410at 302.879 kb on - strand, within ABZR86_RS01410at 302.936 kb on + strand, within ABZR86_RS01410at 302.936 kb on + strand, within ABZR86_RS01410at 302.937 kb on - strand, within ABZR86_RS01410at 303.038 kb on + strand, within ABZR86_RS01410at 303.057 kb on + strand, within ABZR86_RS01410at 303.057 kb on + strand, within ABZR86_RS01410at 303.277 kb on + strandat 303.278 kb on - strandat 303.278 kb on - strandat 303.292 kb on + strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.299 kb on - strandat 303.398 kb on + strandat 303.398 kb on + strandat 303.398 kb on + strandat 303.399 kb on - strandat 303.399 kb on - strandat 303.399 kb on - strandat 303.399 kb on - strandat 303.402 kb on + strandat 303.402 kb on + strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.404 kb on + strandat 303.404 kb on + strandat 303.546 kb on + strandat 303.546 kb on + strandat 303.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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301,038 + ABZR86_RS01395 0.87 +0.2
301,038 + ABZR86_RS01395 0.87 -0.0
301,039 - ABZR86_RS01395 0.87 +0.3
301,039 - ABZR86_RS01395 0.87 +0.1
301,039 - ABZR86_RS01395 0.87 +1.0
301,039 - ABZR86_RS01395 0.87 +0.8
301,039 - ABZR86_RS01395 0.87 -0.1
301,039 - ABZR86_RS01395 0.87 -0.4
301,106 + -0.2
301,106 + +0.8
301,107 - -1.2
301,250 - -0.6
301,347 + -0.2
301,520 + ABZR86_RS01400 0.35 -0.5
301,524 + ABZR86_RS01400 0.36 +0.7
301,524 + ABZR86_RS01400 0.36 +0.5
301,524 + ABZR86_RS01400 0.36 +0.5
301,524 + ABZR86_RS01400 0.36 +0.5
301,524 + ABZR86_RS01400 0.36 +0.3
301,524 + ABZR86_RS01400 0.36 -1.0
301,525 - ABZR86_RS01400 0.36 -0.6
301,525 - ABZR86_RS01400 0.36 -0.2
301,525 - ABZR86_RS01400 0.36 +0.3
301,525 - ABZR86_RS01400 0.36 +0.7
301,525 - ABZR86_RS01400 0.36 +0.3
301,525 - ABZR86_RS01400 0.36 -0.3
301,525 - ABZR86_RS01400 0.36 -0.0
301,525 - ABZR86_RS01400 0.36 +0.6
301,525 - ABZR86_RS01400 0.36 +0.1
301,525 - ABZR86_RS01400 0.36 +1.1
301,525 - ABZR86_RS01400 0.36 +0.6
301,682 + ABZR86_RS01400 0.70 +0.1
301,682 + ABZR86_RS01400 0.70 +0.3
301,682 + ABZR86_RS01400 0.70 -0.2
301,682 + ABZR86_RS01400 0.70 +0.5
301,683 - ABZR86_RS01400 0.70 +0.7
301,700 + ABZR86_RS01400 0.73 +0.6
301,700 + ABZR86_RS01400 0.73 +0.8
301,701 - ABZR86_RS01400 0.74 -0.6
301,792 + +0.7
301,792 + +0.1
301,824 - -0.0
301,824 - +0.1
301,824 - -0.4
301,824 - -0.4
301,824 - +0.0
301,877 - +0.0
301,924 + -0.3
301,924 + +0.1
301,949 + -0.2
301,949 + -0.6
301,949 + -0.3
301,950 - +0.0
302,028 + ABZR86_RS01405 0.18 +0.2
302,029 - ABZR86_RS01405 0.18 +0.5
302,048 + ABZR86_RS01405 0.21 +0.2
302,049 - ABZR86_RS01405 0.21 -0.1
302,049 - ABZR86_RS01405 0.21 -2.6
302,049 - ABZR86_RS01405 0.21 -0.1
302,049 - ABZR86_RS01405 0.21 +0.5
302,049 - ABZR86_RS01405 0.21 -1.5
302,049 - ABZR86_RS01405 0.21 +0.3
302,171 - ABZR86_RS01405 0.39 +0.4
302,171 - ABZR86_RS01405 0.39 +0.3
302,171 - ABZR86_RS01405 0.39 -0.2
302,319 + ABZR86_RS01405 0.62 +0.2
302,320 - ABZR86_RS01405 0.62 -0.5
302,320 - ABZR86_RS01405 0.62 +0.0
302,320 - ABZR86_RS01405 0.62 +0.2
302,354 - ABZR86_RS01405 0.67 +0.5
302,878 + ABZR86_RS01410 0.47 -0.1
302,879 - ABZR86_RS01410 0.48 +0.1
302,936 + ABZR86_RS01410 0.56 +0.3
302,936 + ABZR86_RS01410 0.56 -1.0
302,937 - ABZR86_RS01410 0.57 +0.4
303,038 + ABZR86_RS01410 0.72 +0.4
303,057 + ABZR86_RS01410 0.75 +0.3
303,057 + ABZR86_RS01410 0.75 +0.5
303,277 + -1.1
303,278 - -0.4
303,278 - -0.1
303,292 + -1.7
303,293 - -0.2
303,293 - -0.7
303,293 - -1.6
303,293 - -0.6
303,293 - -2.7
303,293 - +0.4
303,299 - -0.1
303,398 + -0.4
303,398 + -0.5
303,398 + +0.0
303,399 - +0.9
303,399 - -0.3
303,399 - +0.2
303,399 - -0.3
303,402 + +0.5
303,402 + +0.2
303,403 - -0.9
303,403 - -0.4
303,403 - -1.4
303,403 - -0.1
303,403 - +0.4
303,403 - +0.4
303,403 - -0.2
303,403 - -0.1
303,403 - -0.5
303,403 - +0.3
303,404 + +0.3
303,404 + +0.2
303,546 + +0.1
303,546 + +1.5
303,547 - +0.3

Or see this region's nucleotide sequence