Experiment: Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6043 and Pf1N1B4_6044 are separated by 230 nucleotides Pf1N1B4_6044 and Pf1N1B4_6045 are separated by 243 nucleotides
Pf1N1B4_6043 - membrane protein, putative, at 505,351 to 506,565
_6043
Pf1N1B4_6044 - hypothetical protein, at 506,796 to 507,065
_6044
Pf1N1B4_6045 - CigR (Putative inner membrane protein), at 507,309 to 507,545
_6045
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.309 kb on + strand, within Pf1N1B4_6043 at 506.309 kb on + strand, within Pf1N1B4_6043 at 506.309 kb on + strand, within Pf1N1B4_6043 at 506.310 kb on - strand at 506.310 kb on - strand, within Pf1N1B4_6043 at 506.310 kb on - strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.311 kb on + strand, within Pf1N1B4_6043 at 506.312 kb on - strand, within Pf1N1B4_6043 at 506.312 kb on - strand, within Pf1N1B4_6043 at 506.312 kb on - strand at 506.312 kb on - strand, within Pf1N1B4_6043 at 506.312 kb on - strand, within Pf1N1B4_6043 at 506.312 kb on - strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.315 kb on + strand, within Pf1N1B4_6043 at 506.316 kb on - strand, within Pf1N1B4_6043 at 506.316 kb on - strand, within Pf1N1B4_6043 at 506.316 kb on - strand, within Pf1N1B4_6043 at 506.316 kb on - strand, within Pf1N1B4_6043 at 506.316 kb on - strand, within Pf1N1B4_6043 at 506.563 kb on + strand at 506.563 kb on + strand at 506.563 kb on + strand at 506.563 kb on + strand at 506.563 kb on + strand at 506.564 kb on - strand at 506.666 kb on + strand at 506.667 kb on - strand at 507.153 kb on + strand at 507.165 kb on + strand at 507.165 kb on + strand at 507.165 kb on + strand at 507.166 kb on - strand at 507.166 kb on - strand at 507.261 kb on + strand at 507.261 kb on + strand at 507.261 kb on + strand at 507.262 kb on - strand at 507.262 kb on - strand at 507.272 kb on - strand at 507.272 kb on - strand at 507.337 kb on + strand, within Pf1N1B4_6045 at 507.338 kb on - strand, within Pf1N1B4_6045 at 507.406 kb on + strand, within Pf1N1B4_6045 at 507.407 kb on - strand at 507.407 kb on - strand, within Pf1N1B4_6045 at 507.407 kb on - strand, within Pf1N1B4_6045 at 507.746 kb on + strand at 507.747 kb on - strand at 507.770 kb on + strand at 507.770 kb on + strand at 507.770 kb on + strand at 507.770 kb on + strand at 507.770 kb on + strand at 507.770 kb on + strand at 507.770 kb on + strand at 507.771 kb on - strand at 507.771 kb on - strand at 507.771 kb on - strand at 507.771 kb on - strand at 507.776 kb on + strand at 507.776 kb on + strand at 507.777 kb on - strand at 507.777 kb on - strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.813 kb on + strand at 507.814 kb on - strand at 507.814 kb on - strand at 507.814 kb on - strand at 507.814 kb on - strand at 507.815 kb on + strand at 507.815 kb on + strand at 507.815 kb on + strand at 507.816 kb on - strand at 507.834 kb on + strand at 507.834 kb on + strand at 507.834 kb on + strand at 507.835 kb on - strand at 507.976 kb on - strand at 508.014 kb on + strand at 508.015 kb on - strand at 508.038 kb on + strand at 508.038 kb on + strand at 508.186 kb on - strand at 508.186 kb on - strand at 508.186 kb on - strand at 508.186 kb on - strand at 508.280 kb on - strand at 508.280 kb on - strand at 508.301 kb on + strand at 508.337 kb on - strand at 508.344 kb on + strand at 508.345 kb on - strand at 508.345 kb on - strand at 508.345 kb on - strand at 508.345 kb on - strand at 508.345 kb on - strand at 508.398 kb on - strand at 508.519 kb on + strand at 508.520 kb on - strand at 508.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 300 mM remove 506,309 + Pf1N1B4_6043 0.79 -0.4 506,309 + Pf1N1B4_6043 0.79 -0.9 506,309 + Pf1N1B4_6043 0.79 -0.4 506,310 - -1.4 506,310 - Pf1N1B4_6043 0.79 -0.9 506,310 - Pf1N1B4_6043 0.79 -1.1 506,311 + Pf1N1B4_6043 0.79 -2.8 506,311 + Pf1N1B4_6043 0.79 +0.9 506,311 + Pf1N1B4_6043 0.79 -1.4 506,311 + Pf1N1B4_6043 0.79 -2.7 506,311 + Pf1N1B4_6043 0.79 +0.2 506,311 + Pf1N1B4_6043 0.79 -0.9 506,311 + Pf1N1B4_6043 0.79 +0.6 506,311 + Pf1N1B4_6043 0.79 -0.4 506,312 - Pf1N1B4_6043 0.79 +0.2 506,312 - Pf1N1B4_6043 0.79 +0.1 506,312 - +1.0 506,312 - Pf1N1B4_6043 0.79 -0.4 506,312 - Pf1N1B4_6043 0.79 +0.1 506,312 - Pf1N1B4_6043 0.79 -1.7 506,315 + Pf1N1B4_6043 0.79 -0.4 506,315 + Pf1N1B4_6043 0.79 +0.5 506,315 + Pf1N1B4_6043 0.79 -0.4 506,315 + Pf1N1B4_6043 0.79 -0.2 506,315 + Pf1N1B4_6043 0.79 +0.2 506,315 + Pf1N1B4_6043 0.79 -0.7 506,315 + Pf1N1B4_6043 0.79 +0.4 506,316 - Pf1N1B4_6043 0.79 -0.6 506,316 - Pf1N1B4_6043 0.79 -0.4 506,316 - Pf1N1B4_6043 0.79 -1.1 506,316 - Pf1N1B4_6043 0.79 +0.3 506,316 - Pf1N1B4_6043 0.79 -2.4 506,563 + -0.9 506,563 + -0.8 506,563 + -1.1 506,563 + -0.7 506,563 + +0.2 506,564 - -1.2 506,666 + -1.9 506,667 - +0.6 507,153 + -0.4 507,165 + +0.3 507,165 + -0.4 507,165 + -0.2 507,166 - -1.7 507,166 - +0.2 507,261 + -0.4 507,261 + +0.4 507,261 + +0.2 507,262 - -1.7 507,262 - -0.4 507,272 - -0.4 507,272 - -2.1 507,337 + Pf1N1B4_6045 0.12 -1.7 507,338 - Pf1N1B4_6045 0.12 -1.7 507,406 + Pf1N1B4_6045 0.41 -2.7 507,407 - +0.6 507,407 - Pf1N1B4_6045 0.41 +0.6 507,407 - Pf1N1B4_6045 0.41 +0.6 507,746 + -0.1 507,747 - -0.9 507,770 + -0.1 507,770 + -0.3 507,770 + -1.7 507,770 + -2.4 507,770 + -1.9 507,770 + -0.9 507,770 + +0.2 507,771 - -1.4 507,771 - +0.2 507,771 - -1.4 507,771 - +0.2 507,776 + +1.1 507,776 + -1.2 507,777 - +0.6 507,777 - -1.4 507,813 + -0.1 507,813 + -0.5 507,813 + -0.1 507,813 + -0.0 507,813 + +0.1 507,813 + +2.6 507,813 + -0.0 507,813 + +0.9 507,813 + -0.6 507,813 + -0.2 507,813 + +0.6 507,814 - -0.6 507,814 - +0.6 507,814 - +0.6 507,814 - +2.0 507,815 + -0.2 507,815 + -1.7 507,815 + +0.2 507,816 - +0.6 507,834 + -0.2 507,834 + -2.4 507,834 + -1.4 507,835 - +1.1 507,976 - -0.4 508,014 + -0.2 508,015 - -0.9 508,038 + -1.3 508,038 + +0.6 508,186 - -1.1 508,186 - -0.4 508,186 - -0.1 508,186 - +0.3 508,280 - -1.2 508,280 - -0.4 508,301 + +0.2 508,337 - +0.6 508,344 + -0.0 508,345 - -1.4 508,345 - -1.4 508,345 - -0.3 508,345 - +1.4 508,345 - -0.9 508,398 - +0.2 508,519 + +0.6 508,520 - +0.3 508,542 - -0.6
Or see this region's nucleotide sequence