Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4587

Experiment: Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4585 and Pf1N1B4_4586 are separated by 73 nucleotidesPf1N1B4_4586 and Pf1N1B4_4587 are separated by 35 nucleotidesPf1N1B4_4587 and Pf1N1B4_4588 are separated by 112 nucleotides Pf1N1B4_4585 - Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein, at 5,056,612 to 5,057,190 _4585 Pf1N1B4_4586 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 5,057,264 to 5,057,872 _4586 Pf1N1B4_4587 - probable dioxygenase, at 5,057,908 to 5,058,333 _4587 Pf1N1B4_4588 - Transcriptional regulator, at 5,058,446 to 5,059,312 _4588 Position (kb) 5057 5058 5059Strain fitness (log2 ratio) -2 -1 0 1at 5057.185 kb on - strandat 5057.236 kb on - strandat 5057.236 kb on - strandat 5057.759 kb on + strand, within Pf1N1B4_4586at 5057.842 kb on + strandat 5058.126 kb on + strand, within Pf1N1B4_4587at 5058.126 kb on + strand, within Pf1N1B4_4587at 5058.126 kb on + strand, within Pf1N1B4_4587at 5058.127 kb on - strand, within Pf1N1B4_4587at 5058.270 kb on - strand, within Pf1N1B4_4587at 5058.270 kb on - strandat 5058.371 kb on + strandat 5058.445 kb on + strandat 5058.445 kb on + strandat 5058.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 300 mM
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5,057,185 - -0.2
5,057,236 - +1.6
5,057,236 - +1.0
5,057,759 + Pf1N1B4_4586 0.81 +0.6
5,057,842 + -0.2
5,058,126 + Pf1N1B4_4587 0.51 -2.2
5,058,126 + Pf1N1B4_4587 0.51 -0.1
5,058,126 + Pf1N1B4_4587 0.51 -1.7
5,058,127 - Pf1N1B4_4587 0.51 -1.0
5,058,270 - Pf1N1B4_4587 0.85 -0.8
5,058,270 - +0.0
5,058,371 + -1.4
5,058,445 + -0.4
5,058,445 + -1.0
5,058,446 - -1.0

Or see this region's nucleotide sequence