Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3091

Experiment: Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3090 and Pf1N1B4_3091 are separated by 67 nucleotidesPf1N1B4_3091 and Pf1N1B4_3092 are separated by 72 nucleotides Pf1N1B4_3090 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,472,618 to 3,473,808 _3090 Pf1N1B4_3091 - Membrane-associated zinc metalloprotease, at 3,473,876 to 3,475,213 _3091 Pf1N1B4_3092 - Outer membrane protein assembly factor YaeT precursor, at 3,475,286 to 3,477,676 _3092 Position (kb) 3473 3474 3475 3476Strain fitness (log2 ratio) -3 -2 -1 0 1at 3473.806 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.841 kb on + strandat 3473.842 kb on - strandat 3473.858 kb on + strandat 3473.858 kb on + strandat 3473.858 kb on + strandat 3473.859 kb on - strandat 3473.859 kb on - strandat 3473.859 kb on - strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3474.125 kb on - strand, within Pf1N1B4_3091at 3474.186 kb on + strand, within Pf1N1B4_3091at 3474.640 kb on - strand, within Pf1N1B4_3091at 3474.656 kb on - strand, within Pf1N1B4_3091at 3474.876 kb on + strand, within Pf1N1B4_3091at 3474.876 kb on + strand, within Pf1N1B4_3091at 3475.013 kb on + strand, within Pf1N1B4_3091at 3475.013 kb on + strand, within Pf1N1B4_3091at 3475.013 kb on + strand, within Pf1N1B4_3091at 3475.021 kb on + strandat 3475.021 kb on + strand, within Pf1N1B4_3091at 3475.085 kb on + strandat 3475.085 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.211 kb on + strandat 3475.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 300 mM
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3,473,806 + +1.3
3,473,818 + -0.9
3,473,818 + -0.3
3,473,818 + -0.4
3,473,818 + +1.1
3,473,818 + +1.1
3,473,818 + -0.3
3,473,818 + +0.5
3,473,818 + +0.4
3,473,818 + +1.6
3,473,818 + -0.5
3,473,841 + -0.9
3,473,842 - -1.3
3,473,858 + -0.5
3,473,858 + +1.1
3,473,858 + -1.5
3,473,859 - -0.9
3,473,859 - -0.8
3,473,859 - -1.6
3,473,873 + -0.7
3,473,873 + +0.5
3,473,873 + -0.9
3,473,873 + -0.1
3,473,873 + -0.4
3,473,873 + -0.4
3,473,873 + +1.1
3,473,873 + +1.5
3,473,874 - -0.1
3,473,874 - +0.1
3,473,874 - -3.0
3,473,874 - -1.8
3,473,874 - -0.5
3,473,874 - -1.8
3,473,875 + -0.8
3,473,875 + -0.2
3,473,875 + -2.1
3,473,875 + +0.1
3,473,875 + -2.1
3,473,875 + +0.1
3,473,875 + -0.9
3,473,875 + -1.5
3,473,876 - -2.1
3,473,876 - +0.8
3,473,876 - -0.3
3,473,876 - -0.2
3,473,876 - -0.8
3,474,125 - Pf1N1B4_3091 0.19 -0.8
3,474,186 + Pf1N1B4_3091 0.23 -0.5
3,474,640 - Pf1N1B4_3091 0.57 -1.3
3,474,656 - Pf1N1B4_3091 0.58 -1.1
3,474,876 + Pf1N1B4_3091 0.75 -0.9
3,474,876 + Pf1N1B4_3091 0.75 -2.1
3,475,013 + Pf1N1B4_3091 0.85 -1.5
3,475,013 + Pf1N1B4_3091 0.85 -0.9
3,475,013 + Pf1N1B4_3091 0.85 +0.8
3,475,021 + +0.1
3,475,021 + Pf1N1B4_3091 0.86 -1.1
3,475,085 + +0.1
3,475,085 + -0.8
3,475,179 + -2.9
3,475,179 + -0.4
3,475,179 + -2.1
3,475,179 + -0.2
3,475,179 + -0.7
3,475,179 + -1.8
3,475,179 + +0.1
3,475,179 + +1.1
3,475,179 + +0.1
3,475,179 + +0.3
3,475,179 + -0.9
3,475,179 + -0.1
3,475,211 + -1.8
3,475,211 + -0.5

Or see this region's nucleotide sequence