Experiment: Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2073 and Pf1N1B4_2074 overlap by 1 nucleotides Pf1N1B4_2074 and Pf1N1B4_2075 overlap by 1 nucleotides Pf1N1B4_2075 and Pf1N1B4_2076 overlap by 8 nucleotides
Pf1N1B4_2073 - Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 2,367,934 to 2,370,978
_2073
Pf1N1B4_2074 - ABC transporter, ATP-binding protein, at 2,370,978 to 2,371,694
_2074
Pf1N1B4_2075 - ABC-type antimicrobial peptide transport system, permease component, at 2,371,694 to 2,372,890
_2075
Pf1N1B4_2076 - FIG00957151: hypothetical protein, at 2,372,883 to 2,374,610
_2076
Position (kb)
2371
2372
2373 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2370.760 kb on + strand at 2370.761 kb on - strand at 2370.761 kb on - strand at 2370.761 kb on - strand at 2370.950 kb on - strand at 2371.261 kb on - strand, within Pf1N1B4_2074 at 2372.170 kb on - strand, within Pf1N1B4_2075 at 2372.379 kb on - strand at 2372.379 kb on - strand, within Pf1N1B4_2075 at 2372.379 kb on - strand, within Pf1N1B4_2075 at 2372.503 kb on - strand at 2372.664 kb on - strand, within Pf1N1B4_2075 at 2372.734 kb on - strand, within Pf1N1B4_2075 at 2372.734 kb on - strand, within Pf1N1B4_2075 at 2372.734 kb on - strand, within Pf1N1B4_2075 at 2372.734 kb on - strand, within Pf1N1B4_2075 at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.886 kb on + strand at 2372.887 kb on - strand at 2372.887 kb on - strand at 2372.887 kb on - strand at 2372.887 kb on - strand at 2372.887 kb on - strand at 2372.887 kb on - strand at 2372.887 kb on - strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.888 kb on + strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.889 kb on - strand at 2372.893 kb on + strand at 2372.948 kb on + strand at 2373.036 kb on + strand at 2373.036 kb on + strand at 2373.037 kb on - strand at 2373.037 kb on - strand at 2373.037 kb on - strand at 2373.037 kb on - strand at 2373.037 kb on - strand at 2373.037 kb on - strand at 2373.037 kb on - strand at 2373.255 kb on + strand, within Pf1N1B4_2076 at 2373.255 kb on + strand, within Pf1N1B4_2076 at 2373.255 kb on + strand at 2373.256 kb on - strand, within Pf1N1B4_2076 at 2373.256 kb on - strand, within Pf1N1B4_2076 at 2373.256 kb on - strand, within Pf1N1B4_2076 at 2373.271 kb on - strand, within Pf1N1B4_2076 at 2373.444 kb on + strand, within Pf1N1B4_2076 at 2373.444 kb on + strand at 2373.465 kb on + strand, within Pf1N1B4_2076 at 2373.465 kb on + strand, within Pf1N1B4_2076 at 2373.466 kb on - strand, within Pf1N1B4_2076 at 2373.466 kb on - strand, within Pf1N1B4_2076 at 2373.803 kb on - strand, within Pf1N1B4_2076 at 2373.803 kb on - strand, within Pf1N1B4_2076 at 2373.806 kb on - strand, within Pf1N1B4_2076 at 2373.806 kb on - strand, within Pf1N1B4_2076 at 2373.832 kb on - strand, within Pf1N1B4_2076 at 2373.832 kb on - strand, within Pf1N1B4_2076
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 300 mM remove 2,370,760 + +0.1 2,370,761 - -0.9 2,370,761 - -0.8 2,370,761 - -0.1 2,370,950 - -1.6 2,371,261 - Pf1N1B4_2074 0.39 -1.0 2,372,170 - Pf1N1B4_2075 0.40 -2.4 2,372,379 - +2.4 2,372,379 - Pf1N1B4_2075 0.57 +0.8 2,372,379 - Pf1N1B4_2075 0.57 -0.4 2,372,503 - -0.6 2,372,664 - Pf1N1B4_2075 0.81 -0.9 2,372,734 - Pf1N1B4_2075 0.87 -1.4 2,372,734 - Pf1N1B4_2075 0.87 -1.0 2,372,734 - Pf1N1B4_2075 0.87 -1.2 2,372,734 - Pf1N1B4_2075 0.87 -1.3 2,372,886 + -0.1 2,372,886 + +0.2 2,372,886 + -0.2 2,372,886 + -0.6 2,372,886 + -0.9 2,372,886 + +0.1 2,372,886 + +0.4 2,372,886 + +1.4 2,372,886 + +1.7 2,372,886 + -0.2 2,372,886 + -0.7 2,372,886 + +2.4 2,372,886 + -0.2 2,372,886 + -0.8 2,372,887 - -0.2 2,372,887 - +0.3 2,372,887 - -1.4 2,372,887 - +0.1 2,372,887 - -1.4 2,372,887 - -0.9 2,372,887 - -0.6 2,372,888 + -0.4 2,372,888 + -0.6 2,372,888 + -0.2 2,372,888 + -0.2 2,372,888 + -0.9 2,372,888 + -1.6 2,372,888 + -1.9 2,372,888 + +0.8 2,372,888 + -0.2 2,372,888 + +0.8 2,372,888 + -0.9 2,372,889 - +1.4 2,372,889 - -0.8 2,372,889 - -0.9 2,372,889 - -0.6 2,372,889 - -0.9 2,372,889 - -1.6 2,372,889 - +2.2 2,372,889 - +0.8 2,372,889 - -0.8 2,372,889 - +0.4 2,372,889 - +0.9 2,372,889 - +0.6 2,372,889 - -1.1 2,372,889 - -1.2 2,372,889 - +0.8 2,372,889 - +0.4 2,372,893 + -0.2 2,372,948 + -1.8 2,373,036 + -0.9 2,373,036 + -0.9 2,373,037 - +0.1 2,373,037 - +0.4 2,373,037 - -1.2 2,373,037 - +0.1 2,373,037 - -2.1 2,373,037 - -0.5 2,373,037 - +0.7 2,373,255 + Pf1N1B4_2076 0.22 -0.8 2,373,255 + Pf1N1B4_2076 0.22 +0.4 2,373,255 + +0.4 2,373,256 - Pf1N1B4_2076 0.22 +0.7 2,373,256 - Pf1N1B4_2076 0.22 +0.8 2,373,256 - Pf1N1B4_2076 0.22 +0.2 2,373,271 - Pf1N1B4_2076 0.22 +0.4 2,373,444 + Pf1N1B4_2076 0.32 -0.8 2,373,444 + +1.4 2,373,465 + Pf1N1B4_2076 0.34 -0.1 2,373,465 + Pf1N1B4_2076 0.34 -0.6 2,373,466 - Pf1N1B4_2076 0.34 -0.0 2,373,466 - Pf1N1B4_2076 0.34 -0.2 2,373,803 - Pf1N1B4_2076 0.53 -0.8 2,373,803 - Pf1N1B4_2076 0.53 +0.2 2,373,806 - Pf1N1B4_2076 0.53 +0.4 2,373,806 - Pf1N1B4_2076 0.53 -0.4 2,373,832 - Pf1N1B4_2076 0.55 +0.6 2,373,832 - Pf1N1B4_2076 0.55 +0.1
Or see this region's nucleotide sequence