Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1421

Experiment: Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1419 and Pf1N1B4_1420 are separated by 182 nucleotidesPf1N1B4_1420 and Pf1N1B4_1421 are separated by 107 nucleotidesPf1N1B4_1421 and Pf1N1B4_1422 are separated by 212 nucleotidesPf1N1B4_1422 and Pf1N1B4_1423 are separated by 3 nucleotides Pf1N1B4_1419 - putative membrane protein, at 1,628,551 to 1,629,162 _1419 Pf1N1B4_1420 - 3'-to-5' oligoribonuclease (orn), at 1,629,345 to 1,629,887 _1420 Pf1N1B4_1421 - Ribosome small subunit-stimulated GTPase EngC, at 1,629,995 to 1,631,026 _1421 Pf1N1B4_1422 - hypothetical protein, at 1,631,239 to 1,631,646 _1422 Pf1N1B4_1423 - Peptidase C14, caspase catalytic subunit p20, at 1,631,650 to 1,632,609 _1423 Position (kb) 1629 1630 1631 1632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1629.146 kb on + strandat 1629.146 kb on + strandat 1629.146 kb on + strandat 1629.147 kb on - strandat 1629.195 kb on - strandat 1629.202 kb on + strandat 1629.203 kb on - strandat 1629.237 kb on - strandat 1629.237 kb on - strandat 1629.274 kb on + strandat 1629.274 kb on + strandat 1629.274 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.281 kb on - strandat 1629.281 kb on - strandat 1629.281 kb on - strandat 1629.906 kb on - strandat 1629.906 kb on - strandat 1629.918 kb on + strandat 1629.944 kb on + strandat 1629.944 kb on + strandat 1629.965 kb on + strandat 1629.965 kb on + strandat 1631.021 kb on + strandat 1631.021 kb on + strandat 1631.022 kb on - strandat 1631.024 kb on + strandat 1631.025 kb on - strandat 1631.025 kb on - strandat 1631.025 kb on - strandat 1631.075 kb on - strandat 1631.075 kb on - strandat 1631.075 kb on - strandat 1631.075 kb on - strandat 1631.075 kb on - strandat 1631.075 kb on - strandat 1631.083 kb on - strandat 1631.083 kb on - strandat 1631.083 kb on - strandat 1631.121 kb on - strandat 1631.144 kb on - strandat 1631.144 kb on - strandat 1631.194 kb on + strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.195 kb on - strandat 1631.248 kb on + strandat 1631.248 kb on + strandat 1631.249 kb on - strandat 1631.249 kb on - strandat 1631.249 kb on - strandat 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.458 kb on + strand, within Pf1N1B4_1422at 1631.459 kb on - strand, within Pf1N1B4_1422at 1631.459 kb on - strand, within Pf1N1B4_1422at 1631.459 kb on - strand, within Pf1N1B4_1422at 1631.459 kb on - strand, within Pf1N1B4_1422at 1631.467 kb on + strand, within Pf1N1B4_1422at 1631.468 kb on - strand, within Pf1N1B4_1422at 1631.468 kb on - strand, within Pf1N1B4_1422at 1631.468 kb on - strand, within Pf1N1B4_1422at 1631.676 kb on + strandat 1631.677 kb on - strandat 1631.679 kb on + strandat 1631.679 kb on + strandat 1631.679 kb on + strandat 1631.679 kb on + strandat 1631.680 kb on - strandat 1631.680 kb on - strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.683 kb on + strandat 1631.684 kb on - strandat 1631.684 kb on - strandat 1631.684 kb on - strandat 1631.878 kb on + strand, within Pf1N1B4_1423at 1631.878 kb on + strand, within Pf1N1B4_1423at 1631.878 kb on + strand, within Pf1N1B4_1423at 1631.879 kb on - strand, within Pf1N1B4_1423at 1631.879 kb on - strand, within Pf1N1B4_1423at 1631.879 kb on - strand, within Pf1N1B4_1423at 1631.942 kb on - strand, within Pf1N1B4_1423at 1631.942 kb on - strand, within Pf1N1B4_1423at 1631.942 kb on - strand, within Pf1N1B4_1423at 1632.002 kb on + strand, within Pf1N1B4_1423at 1632.024 kb on + strand, within Pf1N1B4_1423at 1632.025 kb on - strand, within Pf1N1B4_1423

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 300 mM
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1,629,146 + -1.1
1,629,146 + -1.8
1,629,146 + +0.7
1,629,147 - +0.4
1,629,195 - +0.2
1,629,202 + +0.2
1,629,203 - -0.9
1,629,237 - -1.3
1,629,237 - -0.1
1,629,274 + +0.7
1,629,274 + -0.4
1,629,274 + -1.6
1,629,280 + +0.2
1,629,280 + +0.2
1,629,280 + -1.3
1,629,280 + -0.5
1,629,280 + -0.3
1,629,281 - -0.3
1,629,281 - -1.1
1,629,281 - -0.3
1,629,906 - -1.0
1,629,906 - -0.2
1,629,918 + +0.5
1,629,944 + +0.2
1,629,944 + +1.7
1,629,965 + -0.8
1,629,965 + +0.7
1,631,021 + +0.4
1,631,021 + -0.8
1,631,022 - -1.9
1,631,024 + -0.3
1,631,025 - +1.2
1,631,025 - +1.2
1,631,025 - +0.2
1,631,075 - +0.2
1,631,075 - -1.1
1,631,075 - +1.2
1,631,075 - +0.7
1,631,075 - -0.5
1,631,075 - -0.3
1,631,083 - -0.6
1,631,083 - -1.2
1,631,083 - +0.2
1,631,121 - -1.1
1,631,144 - +1.2
1,631,144 - -0.9
1,631,194 + -0.1
1,631,195 - +0.4
1,631,195 - -0.6
1,631,195 - +0.5
1,631,195 - +1.6
1,631,195 - -2.7
1,631,195 - +2.2
1,631,195 - +2.2
1,631,195 - +2.8
1,631,248 + +0.8
1,631,248 + +0.2
1,631,249 - -2.3
1,631,249 - -0.1
1,631,249 - +0.3
1,631,458 + Pf1N1B4_1422 0.54 +0.7
1,631,458 + Pf1N1B4_1422 0.54 -0.8
1,631,458 + Pf1N1B4_1422 0.54 -0.8
1,631,458 + Pf1N1B4_1422 0.54 +0.2
1,631,458 + Pf1N1B4_1422 0.54 -2.9
1,631,458 + Pf1N1B4_1422 0.54 -1.3
1,631,458 + Pf1N1B4_1422 0.54 +0.2
1,631,459 - Pf1N1B4_1422 0.54 +1.8
1,631,459 - Pf1N1B4_1422 0.54 +1.2
1,631,459 - Pf1N1B4_1422 0.54 -0.8
1,631,459 - Pf1N1B4_1422 0.54 -0.3
1,631,467 + Pf1N1B4_1422 0.56 -1.1
1,631,468 - Pf1N1B4_1422 0.56 -1.1
1,631,468 - Pf1N1B4_1422 0.56 +0.2
1,631,468 - Pf1N1B4_1422 0.56 -0.1
1,631,676 + -0.1
1,631,677 - -1.1
1,631,679 + -0.8
1,631,679 + +0.2
1,631,679 + -0.8
1,631,679 + -0.2
1,631,680 - -0.3
1,631,680 - +1.2
1,631,683 + +0.8
1,631,683 + +0.2
1,631,683 + -0.3
1,631,683 + +0.0
1,631,683 + -0.8
1,631,683 + +0.5
1,631,683 + -0.1
1,631,683 + -0.8
1,631,683 + -0.5
1,631,683 + -0.2
1,631,683 + +0.7
1,631,684 - +0.7
1,631,684 - -1.1
1,631,684 - +0.5
1,631,878 + Pf1N1B4_1423 0.24 +2.6
1,631,878 + Pf1N1B4_1423 0.24 -0.3
1,631,878 + Pf1N1B4_1423 0.24 +3.4
1,631,879 - Pf1N1B4_1423 0.24 -1.2
1,631,879 - Pf1N1B4_1423 0.24 +0.5
1,631,879 - Pf1N1B4_1423 0.24 +0.5
1,631,942 - Pf1N1B4_1423 0.30 +1.2
1,631,942 - Pf1N1B4_1423 0.30 -0.3
1,631,942 - Pf1N1B4_1423 0.30 +0.4
1,632,002 + Pf1N1B4_1423 0.37 -1.6
1,632,024 + Pf1N1B4_1423 0.39 +0.8
1,632,025 - Pf1N1B4_1423 0.39 +0.9

Or see this region's nucleotide sequence