Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12940

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,920,944	+		PFLU_RS12930	0.82	+1.3
2,920,985	+		PFLU_RS12930	0.84	-0.8
2,920,985	+		PFLU_RS12930	0.84	+0.5
2,920,985	+		PFLU_RS12930	0.84	-0.3
2,920,985	+		PFLU_RS12930	0.84	+1.2
2,920,985	+		PFLU_RS12930	0.84	+0.2
2,920,985	+		PFLU_RS12930	0.84	-1.3
2,920,985	+		PFLU_RS12930	0.84	-1.4
2,920,986	-		PFLU_RS12930	0.84	-0.8
2,920,986	-		PFLU_RS12930	0.84	+0.3
2,920,986	-		PFLU_RS12930	0.84	-0.4
2,920,986	-		PFLU_RS12930	0.84	+1.5
2,920,986	-		PFLU_RS12930	0.84	+0.6
2,920,986	-		PFLU_RS12930	0.84	+0.2
2,920,986	-		PFLU_RS12930	0.84	+2.2
2,921,021	+		PFLU_RS12930	0.85	+0.2
2,921,021	+		PFLU_RS12930	0.85	-1.4
2,921,031	+		PFLU_RS12930	0.86	-0.3
2,921,031	+		PFLU_RS12930	0.86	+0.2
2,921,031	+		PFLU_RS12930	0.86	+1.6
2,921,031	+		PFLU_RS12930	0.86	+1.5
2,921,031	+		PFLU_RS12930	0.86	-1.2
2,921,031	+		PFLU_RS12930	0.86	+1.4
2,921,031	+		PFLU_RS12930	0.86	-0.6
2,921,031	+		PFLU_RS12930	0.86	-0.0
2,921,031	+		PFLU_RS12930	0.86	+1.2
2,921,031	+		PFLU_RS12930	0.86	+1.9
2,921,031	+		PFLU_RS12930	0.86	+0.8
2,921,031	+		PFLU_RS12930	0.86	+2.4
2,921,031	+		PFLU_RS12930	0.86	-0.3
2,921,031	+		PFLU_RS12930	0.86	-1.1
2,921,031	+		PFLU_RS12930	0.86	+0.3
2,921,031	+		PFLU_RS12930	0.86	+0.2
2,921,031	+		PFLU_RS12930	0.86	-0.2
2,921,032	-		PFLU_RS12930	0.86	-0.0
2,921,032	-		PFLU_RS12930	0.86	-3.3
2,921,032	-		PFLU_RS12930	0.86	+2.2
2,921,032	-		PFLU_RS12930	0.86	-1.2
2,921,032	-		PFLU_RS12930	0.86	+1.4
2,921,032	-		PFLU_RS12930	0.86	-0.0
2,921,032	-		PFLU_RS12930	0.86	+0.7
2,921,032	-		PFLU_RS12930	0.86	-1.8
2,921,032	-		PFLU_RS12930	0.86	+0.9
2,921,032	-		PFLU_RS12930	0.86	-1.4
2,921,032	-		PFLU_RS12930	0.86	-0.4
2,921,032	-		PFLU_RS12930	0.86	-1.6
2,921,032	-		PFLU_RS12930	0.86	-1.6
2,921,032	-		PFLU_RS12930	0.86	+0.4
2,921,032	-		PFLU_RS12930	0.86	-0.8
2,921,033	+		PFLU_RS12930	0.86	+0.8
2,921,033	+		PFLU_RS12930	0.86	+0.3
2,921,033	+		PFLU_RS12930	0.86	+2.2
2,921,034	-		PFLU_RS12930	0.86	+2.7
2,921,034	-		PFLU_RS12930	0.86	-0.1
2,921,034	-		PFLU_RS12930	0.86	+2.5
2,921,034	-		PFLU_RS12930	0.86	-1.2
2,921,073	+		PFLU_RS12930	0.88	-0.2
2,921,074	-		PFLU_RS12930	0.88	-0.9
2,921,158	-				-2.3
2,921,168	+				+1.2
2,921,226	+				+0.4
2,921,226	+				+1.2
2,921,227	-				-0.4
2,921,227	-				+1.5
2,921,290	+				-1.4
2,921,291	-				-0.1
2,921,291	-				+0.2
2,921,291	-				-1.0
2,921,291	-				+0.2
2,921,291	-				+1.2
2,921,322	+				+0.2
2,921,322	+				+2.2
2,921,322	+				+1.2
2,921,322	+				-0.4
2,921,322	+				-0.6
2,921,322	+				+0.2
2,921,323	-				-1.0
2,921,323	-				-0.5
2,921,323	-				+0.4
2,921,323	-				-0.2
2,921,347	-				+2.0
2,921,356	+				+0.1
2,921,356	+				+0.2
2,921,357	-				+0.6
2,921,367	+				+1.6
2,921,368	-				+1.7
2,921,368	-				-2.2
2,921,368	-				+0.8
2,921,381	+				+2.5
2,921,397	+				+0.8
2,921,397	+				-1.6
2,921,398	-				+4.6
2,921,398	-				+0.6
2,921,398	-				-1.3
2,921,426	+		PFLU_RS12935	0.12	-0.6
2,921,426	+		PFLU_RS12935	0.12	-1.6
2,921,426	+		PFLU_RS12935	0.12	+1.6
2,921,426	+		PFLU_RS12935	0.12	-0.3
2,921,426	+		PFLU_RS12935	0.12	+0.2
2,921,426	+		PFLU_RS12935	0.12	-0.8
2,921,427	-		PFLU_RS12935	0.12	-0.8
2,921,427	-		PFLU_RS12935	0.12	+1.0
2,921,427	-		PFLU_RS12935	0.12	+2.0
2,921,427	-		PFLU_RS12935	0.12	+1.8
2,921,427	-		PFLU_RS12935	0.12	+0.4
2,921,465	+		PFLU_RS12935	0.19	+0.4
2,921,466	-		PFLU_RS12935	0.19	-1.0
2,921,466	-		PFLU_RS12935	0.19	-1.8
2,921,466	-		PFLU_RS12935	0.19	+0.2
2,921,537	+		PFLU_RS12935	0.31	+0.5
2,921,537	+		PFLU_RS12935	0.31	-2.3
2,921,537	+		PFLU_RS12935	0.31	-0.0
2,921,537	+		PFLU_RS12935	0.31	+0.5
2,921,538	-		PFLU_RS12935	0.31	+1.2
2,921,603	+		PFLU_RS12935	0.42	-0.7
2,921,603	+		PFLU_RS12935	0.42	+1.2
2,921,603	+		PFLU_RS12935	0.42	-1.2
2,921,604	-		PFLU_RS12935	0.42	-1.1
2,921,604	-		PFLU_RS12935	0.42	+0.2
2,921,813	+		PFLU_RS12935	0.78	+1.4
2,921,813	+		PFLU_RS12935	0.78	-1.2
2,921,813	+		PFLU_RS12935	0.78	-0.2
2,921,814	-		PFLU_RS12935	0.79	-0.8
2,921,936	+				+1.2
2,922,029	+		PFLU_RS12940	0.11	+2.6
2,922,030	-		PFLU_RS12940	0.11	-0.7
2,922,158	+		PFLU_RS12940	0.25	+0.3
2,922,158	+		PFLU_RS12940	0.25	-0.2
2,922,158	+		PFLU_RS12940	0.25	+2.7
2,922,158	+		PFLU_RS12940	0.25	-2.0
2,922,159	-		PFLU_RS12940	0.25	-0.1
2,922,159	-		PFLU_RS12940	0.25	+1.0
2,922,159	-		PFLU_RS12940	0.25	+1.4
2,922,159	-		PFLU_RS12940	0.25	+4.0
2,922,167	-		PFLU_RS12940	0.26	+1.6
2,922,167	-		PFLU_RS12940	0.26	-0.8
2,922,290	+		PFLU_RS12940	0.40	+0.4
2,922,290	+		PFLU_RS12940	0.40	-0.3
2,922,290	+		PFLU_RS12940	0.40	-0.5
2,922,290	+		PFLU_RS12940	0.40	+0.4
2,922,290	+		PFLU_RS12940	0.40	-0.9
2,922,290	+		PFLU_RS12940	0.40	-0.6
2,922,291	-		PFLU_RS12940	0.40	-2.2
2,922,291	-		PFLU_RS12940	0.40	+0.0
2,922,291	-		PFLU_RS12940	0.40	+0.8
2,922,400	+		PFLU_RS12940	0.52	-0.8
2,922,400	+		PFLU_RS12940	0.52	-2.4
2,922,400	+		PFLU_RS12940	0.52	+1.0
2,922,400	+		PFLU_RS12940	0.52	+0.2
2,922,401	-		PFLU_RS12940	0.52	-1.2
2,922,401	-		PFLU_RS12940	0.52	-1.0
2,922,401	-		PFLU_RS12940	0.52	-0.1
2,922,401	-		PFLU_RS12940	0.52	+1.8
2,922,614	+		PFLU_RS12940	0.76	+0.3
2,922,614	+		PFLU_RS12940	0.76	-1.4
2,922,614	+		PFLU_RS12940	0.76	-0.7
2,922,614	+		PFLU_RS12940	0.76	-1.7
2,922,614	+		PFLU_RS12940	0.76	+1.0
2,922,614	+		PFLU_RS12940	0.76	-1.2
2,922,614	+		PFLU_RS12940	0.76	+3.5
2,922,615	-		PFLU_RS12940	0.76	-1.8
2,922,615	-		PFLU_RS12940	0.76	-3.1
2,922,615	-		PFLU_RS12940	0.76	-1.3
2,922,693	+		PFLU_RS12940	0.85	+0.5
2,922,693	+		PFLU_RS12940	0.85	-2.4
2,922,693	+		PFLU_RS12940	0.85	+0.7
2,922,694	-		PFLU_RS12940	0.85	+0.2
2,922,814	-				+2.2
2,922,814	-				-2.5
2,922,820	+				-1.7
2,922,820	+				-0.1
2,922,820	+				+0.2
2,922,820	+				+2.4
2,922,821	-				+1.2
2,922,821	-				+0.7
2,922,839	+				+1.2
2,922,839	+				-0.5
2,922,839	+				+1.0
2,922,839	+				+1.2
2,922,839	+				-0.0
2,922,840	-				+0.2
2,922,840	-				-2.7
2,922,840	-				+0.9
2,922,840	-				-2.0
2,922,840	-				-0.5
2,922,840	-				-0.8
2,922,864	+				-1.2
2,922,864	+				-1.7
2,922,864	+				-1.4
2,922,864	+				-1.2
2,922,864	+				-0.5
2,922,864	+				+0.2
2,922,864	+				-0.6
2,922,864	+				+1.6
2,922,864	+				+2.4
2,922,864	+				-2.3
2,922,864	+				+0.1
2,922,865	-				-1.3
2,922,865	-				+0.9
2,922,865	-				+4.6
2,922,865	-				-0.8
2,922,865	-				-1.0
2,922,865	-				+1.2
2,922,865	-				-1.7
2,922,865	-				+0.5
2,922,865	-				-1.1
2,922,911	+				+0.9
2,922,945	+				-1.0
2,923,013	+		PFLU_RS12945	0.22	-1.4
2,923,013	+		PFLU_RS12945	0.22	+3.5
2,923,013	+		PFLU_RS12945	0.22	-0.4
2,923,013	+		PFLU_RS12945	0.22	-1.0
2,923,013	+		PFLU_RS12945	0.22	-0.1
2,923,014	-		PFLU_RS12945	0.22	+2.2
2,923,014	-		PFLU_RS12945	0.22	+0.4
2,923,014	-		PFLU_RS12945	0.22	-2.0
2,923,014	-		PFLU_RS12945	0.22	+0.3
2,923,329	+				+1.5
2,923,342	+				+1.7
2,923,343	-				-0.4
2,923,343	-				+1.6
2,923,343	-				-0.7
2,923,450	+		PFLU_RS12950	0.46	+1.1
2,923,450	+		PFLU_RS12950	0.46	+0.9
2,923,450	+		PFLU_RS12950	0.46	+0.7
2,923,451	-		PFLU_RS12950	0.46	+1.2
2,923,451	-		PFLU_RS12950	0.46	+0.0
2,923,451	-		PFLU_RS12950	0.46	-1.2
2,923,451	-		PFLU_RS12950	0.46	+1.7
2,923,451	-		PFLU_RS12950	0.46	+1.5
2,923,460	+		PFLU_RS12950	0.50	-0.3
2,923,460	+		PFLU_RS12950	0.50	+0.2
2,923,460	+		PFLU_RS12950	0.50	+0.6
2,923,460	+		PFLU_RS12950	0.50	+1.2
2,923,460	+		PFLU_RS12950	0.50	-0.4
2,923,460	+		PFLU_RS12950	0.50	-1.4
2,923,460	+		PFLU_RS12950	0.50	-2.9
2,923,460	+		PFLU_RS12950	0.50	+0.9
2,923,460	+		PFLU_RS12950	0.50	-0.2
2,923,461	-		PFLU_RS12950	0.51	-1.2
2,923,461	-		PFLU_RS12950	0.51	+0.0
2,923,461	-		PFLU_RS12950	0.51	+1.6
2,923,522	+		PFLU_RS12950	0.76	-0.6
2,923,522	+		PFLU_RS12950	0.76	-0.8
2,923,523	-		PFLU_RS12950	0.77	+0.9
2,923,523	-		PFLU_RS12950	0.77	-0.2
2,923,523	-		PFLU_RS12950	0.77	+0.5
2,923,523	-		PFLU_RS12950	0.77	+0.3
2,923,523	-		PFLU_RS12950	0.77	+1.6
2,923,523	-		PFLU_RS12950	0.77	-1.5
2,923,563	+				+1.0
2,923,563	+				-0.4
2,923,563	+				+0.2
2,923,563	+				+0.7
2,923,564	-				-0.8
2,923,564	-				+1.2
2,923,564	-				+0.4
2,923,566	+				-2.0
2,923,566	+				-1.2
2,923,566	+				-0.7
2,923,567	-				-1.2
2,923,567	-				-0.0
2,923,567	-				+2.0
2,923,567	-				-2.4
2,923,567	-				+0.2
2,923,567	-				-3.5
2,923,583	+				-1.8
2,923,583	+				+0.3
2,923,583	+				-0.8
2,923,584	-				+1.3
2,923,598	+				+0.9
2,923,599	-				+0.5
2,923,621	+				-1.4
2,923,621	+				-1.8
2,923,621	+				-1.1
2,923,622	-				+0.0
2,923,622	-				+1.8
2,923,642	-				+0.7
2,923,642	-				-0.7
2,923,642	-				+0.5
2,923,646	+				+0.6
2,923,646	+				-1.8
2,923,646	+				-0.1
2,923,646	+				+2.3
2,923,647	-				+1.3
2,923,647	-				+0.3
2,923,647	-				+2.4
2,923,647	-				+0.8
2,923,647	-				-0.4
2,923,647	-				+1.4
2,923,647	-				-0.1
2,923,647	-				-0.4
2,923,651	-				+1.2
2,923,651	-				-2.8
2,923,664	-				-2.9
2,923,664	-				-1.8
2,923,675	-				-1.4
2,923,675	-				-0.4
2,923,693	+				-2.7
2,923,693	+				+0.5
2,923,693	+				-0.1
2,923,693	+				+0.2
2,923,693	+				-0.7
2,923,693	+				-1.8
2,923,693	+				-1.3
2,923,693	+				+0.4
2,923,693	+				-0.4
2,923,693	+				+2.5
2,923,693	+				-2.2
2,923,693	+				-0.8
2,923,693	+				+0.4
2,923,693	+				+1.2
2,923,693	+				+2.7
2,923,693	+				-1.1
2,923,693	+				+0.2
2,923,694	-				-0.3
2,923,694	-				-1.8
2,923,694	-				+1.7
2,923,694	-				+0.7
2,923,694	-				+0.7
2,923,694	-				-1.2
2,923,694	-				-1.7
2,923,694	-				-0.3
2,923,694	-				-0.5
2,923,694	-				-0.7
2,923,728	+				-0.2
2,923,764	+				+1.2
2,923,764	+				-0.4
2,923,764	+				+1.2
2,923,764	+				+0.8
2,923,764	+				-1.0
2,923,764	+				-1.7
2,923,764	+				+1.7
2,923,764	+				+0.7
2,923,764	+				+1.5
2,923,764	+				-0.8
2,923,765	-				-1.2
2,923,765	-				-0.1
2,923,765	-				+1.9
2,923,765	-				+0.8
2,923,765	-				-0.7
2,923,765	-				+0.6
2,923,765	-				-0.7
2,923,765	-				-1.7
2,923,766	+				+0.7
2,923,766	+				+1.2
2,923,766	+				+1.7
2,923,766	+				+0.1
2,923,766	+				-0.0
2,923,766	+				-0.8
2,923,766	+				-2.4
2,923,767	-				+0.4
2,923,767	-				-0.8
2,923,767	-				-1.4
2,923,770	+				+0.4
2,923,770	+				-0.3
2,923,770	+				-0.0
2,923,770	+				+1.0
2,923,770	+				-1.2
2,923,770	+				+1.9
2,923,770	+				-1.2
2,923,770	+				+0.4
2,923,770	+				+0.5
2,923,770	+				+2.5
2,923,770	+				-0.2
2,923,770	+				-1.4
2,923,770	+				+1.2
2,923,770	+				+0.3
2,923,770	+				+0.7
2,923,771	-				-1.2
2,923,771	-				-0.4
2,923,771	-				-3.3
2,923,771	-				+1.6
2,923,771	-				+1.2
2,923,771	-				-0.8
2,923,817	+				-2.4
2,923,817	+				-1.1
2,923,817	+				-2.5
2,923,817	+				-1.2
2,923,818	-				-0.1
2,923,818	-				+3.4