Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03937

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00773 and CCNA_03937 are separated by 168 nucleotidesCCNA_03937 and CCNA_00774 are separated by 26 nucleotides CCNA_00773: CCNA_00773 - carboxypeptidase S, at 827,458 to 828,936 _00773 CCNA_03937: CCNA_03937 - hypothetical protein, at 829,105 to 829,290 _03937 CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426 _00774 Position (kb) 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 828.110 kb on - strand, within CCNA_00773at 828.163 kb on - strand, within CCNA_00773at 828.183 kb on + strand, within CCNA_00773at 828.237 kb on + strand, within CCNA_00773at 828.269 kb on + strand, within CCNA_00773at 828.269 kb on + strand, within CCNA_00773at 828.274 kb on + strand, within CCNA_00773at 828.277 kb on - strand, within CCNA_00773at 828.277 kb on - strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strandat 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.289 kb on + strand, within CCNA_00773at 828.323 kb on + strand, within CCNA_00773at 828.332 kb on - strand, within CCNA_00773at 828.354 kb on + strand, within CCNA_00773at 828.372 kb on - strand, within CCNA_00773at 828.382 kb on + strand, within CCNA_00773at 828.405 kb on - strand, within CCNA_00773at 828.409 kb on - strand, within CCNA_00773at 828.411 kb on + strand, within CCNA_00773at 828.419 kb on - strand, within CCNA_00773at 828.432 kb on + strand, within CCNA_00773at 828.434 kb on - strand, within CCNA_00773at 828.440 kb on - strand, within CCNA_00773at 828.463 kb on + strand, within CCNA_00773at 828.466 kb on - strand, within CCNA_00773at 828.468 kb on + strand, within CCNA_00773at 828.471 kb on - strand, within CCNA_00773at 828.474 kb on - strand, within CCNA_00773at 828.490 kb on + strand, within CCNA_00773at 828.500 kb on - strand, within CCNA_00773at 828.516 kb on + strand, within CCNA_00773at 828.580 kb on - strand, within CCNA_00773at 828.588 kb on + strand, within CCNA_00773at 828.590 kb on - strand, within CCNA_00773at 828.594 kb on + strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.668 kb on + strand, within CCNA_00773at 828.689 kb on + strand, within CCNA_00773at 828.694 kb on + strand, within CCNA_00773at 828.702 kb on - strand, within CCNA_00773at 828.737 kb on + strand, within CCNA_00773at 828.744 kb on + strand, within CCNA_00773at 828.785 kb on - strand, within CCNA_00773at 828.833 kb on + strandat 828.833 kb on + strandat 828.851 kb on + strandat 828.851 kb on + strandat 828.864 kb on + strandat 828.896 kb on + strandat 828.904 kb on - strandat 828.904 kb on - strandat 828.920 kb on - strandat 828.931 kb on + strandat 828.939 kb on - strandat 829.001 kb on + strandat 829.001 kb on + strandat 829.001 kb on + strandat 829.009 kb on + strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.017 kb on - strandat 829.022 kb on - strandat 829.061 kb on - strandat 829.126 kb on - strand, within CCNA_03937at 829.161 kb on + strand, within CCNA_03937at 829.162 kb on + strand, within CCNA_03937at 829.162 kb on + strand, within CCNA_03937at 829.170 kb on - strand, within CCNA_03937at 829.209 kb on + strand, within CCNA_03937at 829.217 kb on - strand, within CCNA_03937at 829.217 kb on - strand, within CCNA_03937at 829.217 kb on - strand, within CCNA_03937at 829.219 kb on - strand, within CCNA_03937at 829.229 kb on + strand, within CCNA_03937at 829.257 kb on + strand, within CCNA_03937at 829.344 kb on - strandat 829.344 kb on - strandat 829.354 kb on - strandat 829.463 kb on - strand, within CCNA_00774at 829.473 kb on + strand, within CCNA_00774at 829.473 kb on + strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.502 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.525 kb on - strand, within CCNA_00774at 829.547 kb on - strand, within CCNA_00774at 829.569 kb on + strand, within CCNA_00774at 829.593 kb on - strand, within CCNA_00774at 829.623 kb on + strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.675 kb on + strand, within CCNA_00774at 829.683 kb on + strand, within CCNA_00774at 829.683 kb on - strand, within CCNA_00774at 829.707 kb on + strand, within CCNA_00774at 829.707 kb on + strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.741 kb on + strand, within CCNA_00774at 829.795 kb on - strand, within CCNA_00774at 829.811 kb on + strand, within CCNA_00774at 829.811 kb on + strand, within CCNA_00774at 829.819 kb on - strand, within CCNA_00774at 829.819 kb on - strand, within CCNA_00774at 829.835 kb on - strand, within CCNA_00774at 829.840 kb on - strand, within CCNA_00774at 829.860 kb on + strand, within CCNA_00774at 829.860 kb on + strand, within CCNA_00774at 829.869 kb on - strand, within CCNA_00774at 829.888 kb on + strand, within CCNA_00774at 829.888 kb on + strand, within CCNA_00774at 829.896 kb on - strand, within CCNA_00774at 829.899 kb on + strand, within CCNA_00774at 829.907 kb on - strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.017 kb on + strand, within CCNA_00774at 830.020 kb on - strand, within CCNA_00774at 830.020 kb on - strand, within CCNA_00774at 830.062 kb on + strand, within CCNA_00774at 830.070 kb on - strand, within CCNA_00774at 830.083 kb on + strand, within CCNA_00774at 830.170 kb on + strand, within CCNA_00774at 830.251 kb on - strand, within CCNA_00774at 830.259 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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828,110 - CCNA_00773 0.44 +0.3
828,163 - CCNA_00773 0.48 -1.1
828,183 + CCNA_00773 0.49 -1.2
828,237 + CCNA_00773 0.53 -3.0
828,269 + CCNA_00773 0.55 +0.8
828,269 + CCNA_00773 0.55 +0.0
828,274 + CCNA_00773 0.55 -0.7
828,277 - CCNA_00773 0.55 +0.6
828,277 - CCNA_00773 0.55 +1.4
828,279 + CCNA_00773 0.56 -0.3
828,279 + CCNA_00773 0.56 -0.3
828,279 + CCNA_00773 0.56 -1.4
828,279 + CCNA_00773 0.56 -0.4
828,279 + CCNA_00773 0.56 -0.4
828,279 + CCNA_00773 0.56 +0.5
828,279 + CCNA_00773 0.56 +0.6
828,279 + CCNA_00773 0.56 +0.4
828,279 + CCNA_00773 0.56 +0.7
828,279 + CCNA_00773 0.56 -1.7
828,279 + CCNA_00773 0.56 +3.0
828,279 + CCNA_00773 0.56 -1.7
828,279 + CCNA_00773 0.56 -0.2
828,279 + CCNA_00773 0.56 +0.2
828,287 - CCNA_00773 0.56 +3.2
828,287 - CCNA_00773 0.56 -1.2
828,287 - CCNA_00773 0.56 +0.3
828,287 - CCNA_00773 0.56 +1.0
828,287 - CCNA_00773 0.56 +2.4
828,287 - CCNA_00773 0.56 +1.3
828,287 - +2.0
828,287 - CCNA_00773 0.56 +1.3
828,287 - CCNA_00773 0.56 +0.3
828,287 - CCNA_00773 0.56 +0.7
828,287 - CCNA_00773 0.56 +0.4
828,289 + CCNA_00773 0.56 -0.2
828,323 + CCNA_00773 0.58 -0.3
828,332 - CCNA_00773 0.59 +1.3
828,354 + CCNA_00773 0.61 -0.2
828,372 - CCNA_00773 0.62 -0.6
828,382 + CCNA_00773 0.62 -0.2
828,405 - CCNA_00773 0.64 -1.7
828,409 - CCNA_00773 0.64 -0.1
828,411 + CCNA_00773 0.64 +0.3
828,419 - CCNA_00773 0.65 -1.7
828,432 + CCNA_00773 0.66 +0.3
828,434 - CCNA_00773 0.66 -0.7
828,440 - CCNA_00773 0.66 +0.5
828,463 + CCNA_00773 0.68 +0.7
828,466 - CCNA_00773 0.68 -1.2
828,468 + CCNA_00773 0.68 -1.0
828,471 - CCNA_00773 0.68 -0.3
828,474 - CCNA_00773 0.69 +1.6
828,490 + CCNA_00773 0.70 +1.2
828,500 - CCNA_00773 0.70 -1.7
828,516 + CCNA_00773 0.72 +2.2
828,580 - CCNA_00773 0.76 -0.3
828,588 + CCNA_00773 0.76 +0.3
828,590 - CCNA_00773 0.77 +0.3
828,594 + CCNA_00773 0.77 +0.1
828,602 - CCNA_00773 0.77 -0.6
828,602 - CCNA_00773 0.77 -1.2
828,602 - CCNA_00773 0.77 -1.6
828,668 + CCNA_00773 0.82 +0.7
828,689 + CCNA_00773 0.83 -0.2
828,694 + CCNA_00773 0.84 -0.0
828,702 - CCNA_00773 0.84 -0.6
828,737 + CCNA_00773 0.86 +0.6
828,744 + CCNA_00773 0.87 +0.2
828,785 - CCNA_00773 0.90 -0.2
828,833 + +0.8
828,833 + +1.2
828,851 + +0.1
828,851 + -0.1
828,864 + +3.0
828,896 + +4.0
828,904 - -0.4
828,904 - +0.1
828,920 - -0.4
828,931 + +0.4
828,939 - -0.5
829,001 + +3.5
829,001 + -1.6
829,001 + +3.6
829,009 + +1.1
829,009 - +1.3
829,009 - -0.5
829,009 - -0.2
829,017 - +0.9
829,022 - +0.6
829,061 - +0.7
829,126 - CCNA_03937 0.11 +0.9
829,161 + CCNA_03937 0.30 +0.4
829,162 + CCNA_03937 0.31 +2.8
829,162 + CCNA_03937 0.31 -1.0
829,170 - CCNA_03937 0.35 -0.9
829,209 + CCNA_03937 0.56 -0.2
829,217 - CCNA_03937 0.60 -0.6
829,217 - CCNA_03937 0.60 +1.0
829,217 - CCNA_03937 0.60 +0.9
829,219 - CCNA_03937 0.61 +1.4
829,229 + CCNA_03937 0.67 +1.8
829,257 + CCNA_03937 0.82 -2.5
829,344 - -0.3
829,344 - -0.6
829,354 - -0.4
829,463 - CCNA_00774 0.13 +0.8
829,473 + CCNA_00774 0.14 +1.0
829,473 + CCNA_00774 0.14 +0.6
829,481 - CCNA_00774 0.15 +1.7
829,481 - CCNA_00774 0.15 +0.1
829,481 - CCNA_00774 0.15 -1.2
829,494 + CCNA_00774 0.16 -0.2
829,494 + CCNA_00774 0.16 -0.1
829,494 + CCNA_00774 0.16 -1.0
829,494 + CCNA_00774 0.16 +1.2
829,494 + CCNA_00774 0.16 +1.1
829,499 + CCNA_00774 0.16 +1.8
829,499 + CCNA_00774 0.16 -0.1
829,499 + CCNA_00774 0.16 -0.1
829,499 + CCNA_00774 0.16 -0.2
829,499 + CCNA_00774 0.16 -1.3
829,499 + CCNA_00774 0.16 -1.4
829,499 + CCNA_00774 0.16 +0.5
829,499 + CCNA_00774 0.16 +0.2
829,502 - CCNA_00774 0.17 +1.7
829,507 - CCNA_00774 0.17 +0.3
829,507 - CCNA_00774 0.17 -0.8
829,525 - CCNA_00774 0.19 -1.6
829,547 - CCNA_00774 0.21 +0.3
829,569 + CCNA_00774 0.23 +0.8
829,593 - CCNA_00774 0.25 -0.5
829,623 + CCNA_00774 0.28 +0.7
829,631 - CCNA_00774 0.28 -1.2
829,675 + CCNA_00774 0.32 -0.4
829,683 + CCNA_00774 0.33 -0.3
829,683 - CCNA_00774 0.33 -0.3
829,707 + CCNA_00774 0.35 -0.9
829,707 + CCNA_00774 0.35 +0.2
829,725 + CCNA_00774 0.37 +1.4
829,725 + CCNA_00774 0.37 +1.7
829,741 + CCNA_00774 0.38 -0.9
829,795 - CCNA_00774 0.43 -0.2
829,811 + CCNA_00774 0.45 +0.0
829,811 + CCNA_00774 0.45 -1.7
829,819 - CCNA_00774 0.45 +0.4
829,819 - CCNA_00774 0.45 +1.0
829,835 - CCNA_00774 0.47 -0.2
829,840 - CCNA_00774 0.47 +0.7
829,860 + CCNA_00774 0.49 +0.9
829,860 + CCNA_00774 0.49 +1.5
829,869 - CCNA_00774 0.50 -1.6
829,888 + CCNA_00774 0.51 -0.6
829,888 + CCNA_00774 0.51 +0.8
829,896 - CCNA_00774 0.52 -1.5
829,899 + CCNA_00774 0.52 -0.9
829,907 - CCNA_00774 0.53 -0.3
830,006 + CCNA_00774 0.62 -0.1
830,012 + CCNA_00774 0.63 -0.4
830,012 + CCNA_00774 0.63 -0.9
830,017 + CCNA_00774 0.63 -1.3
830,020 - CCNA_00774 0.63 +1.3
830,020 - CCNA_00774 0.63 -0.1
830,062 + CCNA_00774 0.67 -1.5
830,070 - CCNA_00774 0.68 +0.8
830,083 + CCNA_00774 0.69 -1.6
830,170 + CCNA_00774 0.77 -0.7
830,251 - CCNA_00774 0.84 +1.0
830,259 + CCNA_00774 0.85 +1.0
830,289 + CCNA_00774 0.88 +2.0
830,289 + CCNA_00774 0.88 +1.0
830,289 + CCNA_00774 0.88 -2.7
830,289 + CCNA_00774 0.88 -0.1

Or see this region's nucleotide sequence