Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00580 and CCNA_03886 overlap by 4 nucleotides CCNA_03886 and CCNA_00582 are separated by 134 nucleotides CCNA_00582 and CCNA_00583 are separated by 80 nucleotides
CCNA_00580: CCNA_00580 - AAA ATPase domain protein, at 606,207 to 609,290
_00580
CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065
_03886
CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757
_00582
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 608.293 kb on + strand, within CCNA_00580 at 608.294 kb on - strand, within CCNA_00580 at 608.294 kb on - strand, within CCNA_00580 at 608.294 kb on - strand, within CCNA_00580 at 608.301 kb on - strand, within CCNA_00580 at 608.338 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.391 kb on + strand, within CCNA_00580 at 608.401 kb on - strand, within CCNA_00580 at 608.418 kb on - strand, within CCNA_00580 at 608.489 kb on + strand, within CCNA_00580 at 608.499 kb on + strand, within CCNA_00580 at 608.546 kb on - strand, within CCNA_00580 at 608.573 kb on + strand, within CCNA_00580 at 608.620 kb on + strand, within CCNA_00580 at 608.625 kb on + strand, within CCNA_00580 at 608.625 kb on + strand, within CCNA_00580 at 608.625 kb on + strand, within CCNA_00580 at 608.633 kb on - strand, within CCNA_00580 at 608.633 kb on - strand, within CCNA_00580 at 608.660 kb on - strand, within CCNA_00580 at 608.693 kb on - strand, within CCNA_00580 at 608.745 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.768 kb on - strand, within CCNA_00580 at 608.768 kb on - strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.778 kb on - strand, within CCNA_00580 at 608.778 kb on - strand, within CCNA_00580 at 608.778 kb on - strand, within CCNA_00580 at 608.802 kb on + strand, within CCNA_00580 at 608.817 kb on - strand, within CCNA_00580 at 608.827 kb on - strand, within CCNA_00580 at 608.827 kb on - strand, within CCNA_00580 at 608.889 kb on + strand, within CCNA_00580 at 608.910 kb on - strand, within CCNA_00580 at 608.933 kb on - strand, within CCNA_00580 at 608.933 kb on - strand, within CCNA_00580 at 608.945 kb on + strand, within CCNA_00580 at 608.953 kb on - strand, within CCNA_00580 at 608.955 kb on + strand, within CCNA_00580 at 608.963 kb on - strand, within CCNA_00580 at 609.006 kb on + strand at 609.023 kb on - strand at 609.059 kb on + strand at 609.067 kb on - strand at 609.067 kb on - strand at 609.140 kb on + strand at 609.196 kb on + strand at 609.216 kb on + strand at 609.237 kb on - strand at 609.237 kb on - strand at 609.249 kb on - strand at 609.280 kb on + strand at 609.306 kb on - strand at 609.307 kb on + strand at 609.309 kb on - strand at 609.329 kb on - strand at 609.339 kb on - strand at 609.440 kb on - strand at 609.440 kb on - strand at 609.476 kb on - strand, within CCNA_03886 at 609.476 kb on - strand, within CCNA_03886 at 609.480 kb on + strand, within CCNA_03886 at 609.488 kb on - strand, within CCNA_03886 at 609.568 kb on + strand, within CCNA_03886 at 609.594 kb on + strand, within CCNA_03886 at 609.602 kb on - strand, within CCNA_03886 at 609.631 kb on + strand, within CCNA_03886 at 609.632 kb on + strand, within CCNA_03886 at 609.640 kb on - strand, within CCNA_03886 at 609.655 kb on + strand, within CCNA_03886 at 609.655 kb on - strand, within CCNA_03886 at 609.745 kb on - strand, within CCNA_03886 at 609.745 kb on - strand, within CCNA_03886 at 609.747 kb on + strand, within CCNA_03886 at 609.798 kb on - strand, within CCNA_03886 at 609.846 kb on - strand, within CCNA_03886 at 609.856 kb on - strand, within CCNA_03886 at 609.903 kb on - strand, within CCNA_03886 at 609.926 kb on + strand, within CCNA_03886 at 609.926 kb on + strand, within CCNA_03886 at 609.963 kb on + strand at 609.971 kb on - strand, within CCNA_03886 at 609.971 kb on - strand, within CCNA_03886 at 609.986 kb on + strand, within CCNA_03886 at 610.035 kb on + strand, within CCNA_03886 at 610.035 kb on + strand, within CCNA_03886 at 610.043 kb on - strand, within CCNA_03886 at 610.043 kb on - strand, within CCNA_03886 at 610.043 kb on - strand, within CCNA_03886 at 610.062 kb on + strand, within CCNA_03886 at 610.070 kb on - strand, within CCNA_03886 at 610.095 kb on - strand, within CCNA_03886 at 610.103 kb on - strand, within CCNA_03886 at 610.136 kb on + strand, within CCNA_03886 at 610.144 kb on - strand, within CCNA_03886 at 610.158 kb on + strand, within CCNA_03886 at 610.229 kb on + strand, within CCNA_03886 at 610.276 kb on + strand, within CCNA_03886 at 610.321 kb on + strand, within CCNA_03886 at 610.327 kb on - strand, within CCNA_03886 at 610.362 kb on + strand, within CCNA_03886 at 610.364 kb on - strand, within CCNA_03886 at 610.412 kb on + strand, within CCNA_03886 at 610.415 kb on - strand, within CCNA_03886 at 610.415 kb on - strand, within CCNA_03886 at 610.420 kb on - strand, within CCNA_03886 at 610.476 kb on + strand, within CCNA_03886 at 610.492 kb on + strand, within CCNA_03886 at 610.552 kb on - strand, within CCNA_03886 at 610.554 kb on - strand, within CCNA_03886 at 610.592 kb on + strand, within CCNA_03886 at 610.594 kb on + strand, within CCNA_03886 at 610.639 kb on + strand, within CCNA_03886 at 610.683 kb on + strand, within CCNA_03886 at 610.705 kb on - strand at 610.711 kb on + strand at 610.719 kb on + strand, within CCNA_03886 at 610.864 kb on + strand, within CCNA_03886 at 610.871 kb on - strand, within CCNA_03886 at 610.872 kb on - strand at 610.879 kb on - strand, within CCNA_03886 at 610.882 kb on + strand, within CCNA_03886 at 610.905 kb on + strand at 610.909 kb on + strand at 610.913 kb on - strand at 610.913 kb on - strand at 610.928 kb on + strand at 610.934 kb on + strand at 610.937 kb on - strand at 610.966 kb on - strand at 611.051 kb on - strand at 611.063 kb on - strand at 611.144 kb on + strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.226 kb on + strand at 611.229 kb on + strand at 611.244 kb on + strand at 611.248 kb on - strand at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.307 kb on - strand, within CCNA_00582 at 611.324 kb on - strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.333 kb on + strand, within CCNA_00582 at 611.422 kb on + strand, within CCNA_00582 at 611.440 kb on - strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.465 kb on - strand, within CCNA_00582 at 611.470 kb on + strand, within CCNA_00582 at 611.471 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.581 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.698 kb on + strand, within CCNA_00582 at 611.706 kb on - strand at 611.717 kb on - strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.798 kb on + strand at 611.806 kb on - strand at 611.812 kb on + strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.830 kb on + strand at 611.889 kb on - strand at 611.896 kb on - strand at 611.903 kb on + strand at 611.973 kb on + strand at 611.973 kb on + strand at 612.027 kb on - strand, within CCNA_00583 at 612.042 kb on - strand, within CCNA_00583 at 612.047 kb on - strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.065 kb on - strand, within CCNA_00583
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 608,293 + CCNA_00580 0.68 -0.4 608,294 - CCNA_00580 0.68 +0.5 608,294 - CCNA_00580 0.68 +2.0 608,294 - CCNA_00580 0.68 -1.5 608,301 - CCNA_00580 0.68 -0.5 608,338 + CCNA_00580 0.69 -1.1 608,355 + CCNA_00580 0.70 +0.8 608,355 + CCNA_00580 0.70 +0.6 608,355 + CCNA_00580 0.70 -0.8 608,355 + CCNA_00580 0.70 +0.1 608,363 - CCNA_00580 0.70 -0.1 608,363 - CCNA_00580 0.70 +1.2 608,363 - CCNA_00580 0.70 -1.2 608,363 - CCNA_00580 0.70 -2.2 608,391 + CCNA_00580 0.71 -2.2 608,401 - CCNA_00580 0.71 -1.0 608,418 - CCNA_00580 0.72 -0.4 608,489 + CCNA_00580 0.74 -0.1 608,499 + CCNA_00580 0.74 +0.3 608,546 - CCNA_00580 0.76 +0.3 608,573 + CCNA_00580 0.77 -0.4 608,620 + CCNA_00580 0.78 +0.1 608,625 + CCNA_00580 0.78 -0.7 608,625 + CCNA_00580 0.78 -0.2 608,625 + CCNA_00580 0.78 +0.5 608,633 - CCNA_00580 0.79 -1.3 608,633 - CCNA_00580 0.79 +0.2 608,660 - CCNA_00580 0.80 -0.7 608,693 - CCNA_00580 0.81 -0.6 608,745 + CCNA_00580 0.82 -1.4 608,760 + CCNA_00580 0.83 +0.4 608,760 + CCNA_00580 0.83 +1.1 608,760 + CCNA_00580 0.83 -1.8 608,760 + CCNA_00580 0.83 -1.8 608,768 - CCNA_00580 0.83 -1.1 608,768 - CCNA_00580 0.83 +0.3 608,770 + CCNA_00580 0.83 -0.7 608,770 + CCNA_00580 0.83 -1.8 608,770 + CCNA_00580 0.83 -0.4 608,770 + CCNA_00580 0.83 -0.4 608,770 + CCNA_00580 0.83 -1.3 608,778 - CCNA_00580 0.83 +1.7 608,778 - CCNA_00580 0.83 -0.5 608,778 - CCNA_00580 0.83 +0.2 608,802 + CCNA_00580 0.84 +0.3 608,817 - CCNA_00580 0.85 -2.0 608,827 - CCNA_00580 0.85 +0.7 608,827 - CCNA_00580 0.85 +0.4 608,889 + CCNA_00580 0.87 -1.0 608,910 - CCNA_00580 0.88 +0.0 608,933 - CCNA_00580 0.88 -1.5 608,933 - CCNA_00580 0.88 -1.1 608,945 + CCNA_00580 0.89 -1.3 608,953 - CCNA_00580 0.89 +0.3 608,955 + CCNA_00580 0.89 -0.4 608,963 - CCNA_00580 0.89 +0.4 609,006 + +0.5 609,023 - +0.4 609,059 + +1.0 609,067 - -0.3 609,067 - +1.2 609,140 + +1.0 609,196 + +2.4 609,216 + +0.6 609,237 - -0.2 609,237 - -0.4 609,249 - -0.9 609,280 + -0.9 609,306 - -1.7 609,307 + -0.7 609,309 - +1.8 609,329 - -1.2 609,339 - +3.0 609,440 - +1.0 609,440 - +0.2 609,476 - CCNA_03886 0.11 -0.0 609,476 - CCNA_03886 0.11 +0.1 609,480 + CCNA_03886 0.11 +1.0 609,488 - CCNA_03886 0.11 -1.7 609,568 + CCNA_03886 0.16 -0.2 609,594 + CCNA_03886 0.17 -0.9 609,602 - CCNA_03886 0.18 +0.6 609,631 + CCNA_03886 0.19 +0.3 609,632 + CCNA_03886 0.19 -1.1 609,640 - CCNA_03886 0.20 +0.2 609,655 + CCNA_03886 0.21 -1.3 609,655 - CCNA_03886 0.21 -0.6 609,745 - CCNA_03886 0.26 -0.4 609,745 - CCNA_03886 0.26 -0.1 609,747 + CCNA_03886 0.26 -0.6 609,798 - CCNA_03886 0.29 -2.1 609,846 - CCNA_03886 0.31 +1.6 609,856 - CCNA_03886 0.32 -0.4 609,903 - CCNA_03886 0.35 +0.8 609,926 + CCNA_03886 0.36 +0.8 609,926 + CCNA_03886 0.36 +0.1 609,963 + +2.0 609,971 - CCNA_03886 0.38 -1.9 609,971 - CCNA_03886 0.38 -1.8 609,986 + CCNA_03886 0.39 +1.4 610,035 + CCNA_03886 0.42 +1.2 610,035 + CCNA_03886 0.42 -0.0 610,043 - CCNA_03886 0.42 -0.8 610,043 - CCNA_03886 0.42 +0.6 610,043 - CCNA_03886 0.42 -0.8 610,062 + CCNA_03886 0.44 -1.6 610,070 - CCNA_03886 0.44 +0.6 610,095 - CCNA_03886 0.45 -0.3 610,103 - CCNA_03886 0.46 +0.6 610,136 + CCNA_03886 0.48 -0.2 610,144 - CCNA_03886 0.48 -1.0 610,158 + CCNA_03886 0.49 -0.6 610,229 + CCNA_03886 0.53 -1.2 610,276 + CCNA_03886 0.56 -1.8 610,321 + CCNA_03886 0.58 +0.3 610,327 - CCNA_03886 0.58 +1.6 610,362 + CCNA_03886 0.60 +1.6 610,364 - CCNA_03886 0.61 +0.8 610,412 + CCNA_03886 0.63 -0.6 610,415 - CCNA_03886 0.63 -2.0 610,415 - CCNA_03886 0.63 +0.9 610,420 - CCNA_03886 0.64 -0.8 610,476 + CCNA_03886 0.67 -3.0 610,492 + CCNA_03886 0.68 -0.7 610,552 - CCNA_03886 0.71 -1.9 610,554 - CCNA_03886 0.71 -1.7 610,592 + CCNA_03886 0.73 -0.4 610,594 + CCNA_03886 0.73 -0.7 610,639 + CCNA_03886 0.76 -0.0 610,683 + CCNA_03886 0.78 +0.4 610,705 - +1.8 610,711 + +1.4 610,719 + CCNA_03886 0.80 +1.2 610,864 + CCNA_03886 0.89 -1.5 610,871 - CCNA_03886 0.89 -1.0 610,872 - +1.7 610,879 - CCNA_03886 0.89 -1.1 610,882 + CCNA_03886 0.90 -1.9 610,905 + -1.4 610,909 + +0.3 610,913 - +1.7 610,913 - -0.8 610,928 + +0.2 610,934 + +1.0 610,937 - -0.6 610,966 - +1.4 611,051 - -2.6 611,063 - +1.3 611,144 + -0.8 611,152 - -0.6 611,152 - +1.0 611,214 + -0.5 611,214 + -0.1 611,214 + -0.6 611,226 + -1.3 611,229 + +0.3 611,244 + -2.2 611,248 - +0.2 611,284 + CCNA_00582 0.15 -1.6 611,284 + CCNA_00582 0.15 +1.2 611,292 - CCNA_00582 0.16 +0.5 611,292 - CCNA_00582 0.16 -0.5 611,307 - CCNA_00582 0.19 -0.1 611,324 - CCNA_00582 0.22 +1.0 611,326 + CCNA_00582 0.23 +0.4 611,326 + CCNA_00582 0.23 -0.6 611,333 + CCNA_00582 0.24 -0.4 611,422 + CCNA_00582 0.40 +0.4 611,440 - CCNA_00582 0.43 +0.1 611,457 + CCNA_00582 0.46 +0.4 611,457 + CCNA_00582 0.46 -0.1 611,465 - CCNA_00582 0.47 +0.1 611,470 + CCNA_00582 0.48 -0.0 611,471 - CCNA_00582 0.49 +0.5 611,478 - CCNA_00582 0.50 -0.5 611,478 - CCNA_00582 0.50 -0.3 611,483 + CCNA_00582 0.51 +1.6 611,483 + CCNA_00582 0.51 -1.0 611,483 + CCNA_00582 0.51 +1.2 611,501 + CCNA_00582 0.54 +1.3 611,501 + CCNA_00582 0.54 -1.5 611,501 + CCNA_00582 0.54 +1.8 611,509 - CCNA_00582 0.55 -0.0 611,509 - CCNA_00582 0.55 +0.1 611,581 + CCNA_00582 0.68 +0.2 611,586 + CCNA_00582 0.69 -0.8 611,586 + CCNA_00582 0.69 +0.6 611,589 - CCNA_00582 0.70 +0.3 611,589 - CCNA_00582 0.70 +1.7 611,589 - CCNA_00582 0.70 -1.8 611,698 + CCNA_00582 0.89 +0.7 611,706 - +1.0 611,717 - +1.7 611,779 + +1.9 611,779 + -1.1 611,779 + -2.6 611,779 + +0.1 611,779 + -0.1 611,779 + -0.2 611,779 + -0.1 611,779 + -1.8 611,779 + -0.3 611,779 + -0.5 611,779 + +2.3 611,779 + -1.2 611,779 + -0.1 611,779 + +2.1 611,779 + -1.0 611,779 + +0.4 611,779 + -1.8 611,779 + +0.4 611,779 + +0.7 611,779 + +0.3 611,779 + +1.2 611,779 + -0.8 611,779 + -0.3 611,779 + -0.3 611,779 + -1.9 611,779 + -0.7 611,779 + -0.2 611,779 + +0.9 611,779 + -1.1 611,787 - -2.9 611,787 - -0.1 611,787 - -1.8 611,787 - +1.4 611,787 - +2.0 611,787 - +0.4 611,787 - -0.1 611,787 - +1.0 611,787 - -0.1 611,787 - +1.7 611,787 - +1.0 611,787 - -1.7 611,787 - +1.1 611,787 - +0.5 611,787 - -1.3 611,787 - -0.6 611,787 - +0.5 611,787 - -2.2 611,787 - +1.1 611,787 - +0.9 611,787 - -0.9 611,787 - -2.7 611,787 - -1.1 611,787 - -0.8 611,787 - -0.5 611,787 - -0.1 611,798 + +0.2 611,806 - +0.3 611,812 + +0.2 611,820 - +2.3 611,820 - -1.5 611,820 - +1.8 611,830 + -1.2 611,889 - -1.7 611,896 - +0.7 611,903 + -1.9 611,973 + -0.9 611,973 + +0.1 612,027 - CCNA_00583 0.14 -1.2 612,042 - CCNA_00583 0.15 +3.0 612,047 - CCNA_00583 0.15 -1.9 612,057 + CCNA_00583 0.16 -0.4 612,057 + CCNA_00583 0.16 +0.8 612,065 - CCNA_00583 0.17 +0.6
Or see this region's nucleotide sequence