Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03885

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00512 and CCNA_03885 are separated by 238 nucleotidesCCNA_03885 and CCNA_00514 are separated by 143 nucleotides CCNA_00512: CCNA_00512 - GTP-binding protein, probable translation factor, at 525,945 to 527,045 _00512 CCNA_03885: CCNA_03885 - Abi superfamily/CAAX amino terminal protease, at 527,284 to 527,934 _03885 CCNA_00514: CCNA_00514 - pirin, at 528,078 to 528,908 _00514 Position (kb) 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 526.301 kb on - strand, within CCNA_00512at 526.339 kb on + strand, within CCNA_00512at 526.339 kb on + strand, within CCNA_00512at 526.369 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.472 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.478 kb on - strand, within CCNA_00512at 526.479 kb on - strand, within CCNA_00512at 526.519 kb on + strand, within CCNA_00512at 526.519 kb on + strand, within CCNA_00512at 526.558 kb on + strand, within CCNA_00512at 526.564 kb on + strand, within CCNA_00512at 526.635 kb on - strand, within CCNA_00512at 526.637 kb on - strand, within CCNA_00512at 526.788 kb on + strand, within CCNA_00512at 526.790 kb on - strand, within CCNA_00512at 526.812 kb on + strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512at 526.926 kb on + strand, within CCNA_00512at 526.934 kb on - strand, within CCNA_00512at 526.950 kb on - strandat 526.976 kb on + strandat 526.980 kb on - strandat 526.984 kb on + strandat 526.992 kb on - strandat 526.992 kb on - strandat 526.992 kb on - strandat 526.994 kb on + strandat 526.994 kb on + strandat 526.994 kb on + strandat 527.008 kb on + strandat 527.016 kb on - strandat 527.088 kb on + strandat 527.114 kb on + strandat 527.134 kb on + strandat 527.134 kb on + strandat 527.139 kb on + strandat 527.140 kb on - strandat 527.140 kb on - strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.145 kb on + strandat 527.168 kb on + strandat 527.168 kb on + strandat 527.168 kb on + strandat 527.193 kb on - strandat 527.226 kb on + strandat 527.231 kb on + strandat 527.239 kb on - strandat 527.239 kb on - strandat 527.239 kb on - strandat 527.244 kb on - strandat 527.272 kb on + strandat 527.280 kb on - strandat 527.321 kb on - strandat 527.326 kb on - strandat 527.362 kb on + strand, within CCNA_03885at 527.362 kb on + strand, within CCNA_03885at 527.362 kb on + strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.431 kb on + strand, within CCNA_03885at 527.444 kb on + strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.502 kb on - strand, within CCNA_03885at 527.549 kb on - strand, within CCNA_03885at 527.622 kb on + strand, within CCNA_03885at 527.629 kb on - strand, within CCNA_03885at 527.638 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.740 kb on + strand, within CCNA_03885at 527.812 kb on + strand, within CCNA_03885at 527.815 kb on - strand, within CCNA_03885at 527.830 kb on - strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.845 kb on + strand, within CCNA_03885at 527.852 kb on - strand, within CCNA_03885at 527.858 kb on - strand, within CCNA_03885at 527.898 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.908 kb on + strandat 527.908 kb on + strandat 527.973 kb on - strandat 527.978 kb on - strandat 527.984 kb on - strandat 528.003 kb on + strandat 528.010 kb on - strandat 528.083 kb on + strandat 528.110 kb on + strandat 528.116 kb on + strandat 528.124 kb on - strandat 528.124 kb on - strandat 528.124 kb on - strandat 528.130 kb on + strandat 528.143 kb on + strandat 528.151 kb on - strandat 528.170 kb on + strand, within CCNA_00514at 528.179 kb on - strand, within CCNA_00514at 528.205 kb on + strand, within CCNA_00514at 528.224 kb on - strand, within CCNA_00514at 528.260 kb on - strand, within CCNA_00514at 528.266 kb on + strand, within CCNA_00514at 528.272 kb on - strand, within CCNA_00514at 528.302 kb on - strand, within CCNA_00514at 528.311 kb on + strand, within CCNA_00514at 528.311 kb on + strand, within CCNA_00514at 528.319 kb on - strand, within CCNA_00514at 528.330 kb on + strand, within CCNA_00514at 528.337 kb on - strand, within CCNA_00514at 528.338 kb on - strand, within CCNA_00514at 528.369 kb on + strand, within CCNA_00514at 528.405 kb on + strand, within CCNA_00514at 528.405 kb on + strand, within CCNA_00514at 528.413 kb on - strand, within CCNA_00514at 528.424 kb on + strand, within CCNA_00514at 528.424 kb on + strand, within CCNA_00514at 528.432 kb on - strand, within CCNA_00514at 528.432 kb on - strand, within CCNA_00514at 528.436 kb on + strand, within CCNA_00514at 528.436 kb on + strand, within CCNA_00514at 528.621 kb on + strand, within CCNA_00514at 528.645 kb on - strand, within CCNA_00514at 528.645 kb on - strand, within CCNA_00514at 528.662 kb on + strand, within CCNA_00514at 528.690 kb on + strand, within CCNA_00514at 528.690 kb on + strand, within CCNA_00514at 528.698 kb on - strand, within CCNA_00514at 528.713 kb on - strand, within CCNA_00514at 528.757 kb on - strand, within CCNA_00514at 528.777 kb on + strand, within CCNA_00514at 528.802 kb on - strand, within CCNA_00514at 528.832 kb on + strandat 528.856 kb on + strandat 528.864 kb on + strandat 528.864 kb on - strandat 528.878 kb on - strandat 528.902 kb on + strandat 528.910 kb on - strandat 528.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml
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526,301 - CCNA_00512 0.32 +1.3
526,339 + CCNA_00512 0.36 -0.7
526,339 + CCNA_00512 0.36 +0.8
526,369 + CCNA_00512 0.39 +0.9
526,465 + CCNA_00512 0.47 -0.2
526,465 + CCNA_00512 0.47 +0.3
526,472 - CCNA_00512 0.48 +1.4
526,473 - CCNA_00512 0.48 +0.4
526,473 - CCNA_00512 0.48 +0.5
526,473 - CCNA_00512 0.48 +0.5
526,478 - CCNA_00512 0.48 +2.3
526,479 - CCNA_00512 0.49 -0.0
526,519 + CCNA_00512 0.52 -0.7
526,519 + CCNA_00512 0.52 -0.1
526,558 + CCNA_00512 0.56 +1.3
526,564 + CCNA_00512 0.56 +0.4
526,635 - CCNA_00512 0.63 +0.3
526,637 - CCNA_00512 0.63 +3.1
526,788 + CCNA_00512 0.77 +1.9
526,790 - CCNA_00512 0.77 +0.5
526,812 + CCNA_00512 0.79 +0.6
526,873 + CCNA_00512 0.84 -0.0
526,926 + CCNA_00512 0.89 +0.9
526,934 - CCNA_00512 0.90 -0.8
526,950 - +0.0
526,976 + +0.4
526,980 - -0.2
526,984 + -0.5
526,992 - +0.1
526,992 - +0.1
526,992 - +0.2
526,994 + -0.1
526,994 + -0.5
526,994 + +0.3
527,008 + +1.2
527,016 - +0.2
527,088 + -1.7
527,114 + -1.2
527,134 + -0.5
527,134 + -0.0
527,139 + +1.1
527,140 - +0.2
527,140 - -2.8
527,142 - -0.7
527,142 - -0.7
527,142 - +0.2
527,145 + +0.8
527,168 + -0.8
527,168 + -0.9
527,168 + +0.2
527,193 - -0.9
527,226 + +2.4
527,231 + +0.6
527,239 - +1.8
527,239 - -1.2
527,239 - +1.3
527,244 - +1.6
527,272 + -0.6
527,280 - -0.1
527,321 - -1.1
527,326 - -1.1
527,362 + CCNA_03885 0.12 +0.3
527,362 + CCNA_03885 0.12 +0.2
527,362 + CCNA_03885 0.12 -1.2
527,372 + CCNA_03885 0.14 -0.4
527,372 + CCNA_03885 0.14 -0.3
527,431 + CCNA_03885 0.23 -0.6
527,444 + CCNA_03885 0.25 -2.8
527,467 - CCNA_03885 0.28 -0.9
527,467 - CCNA_03885 0.28 +1.6
527,494 + CCNA_03885 0.32 -0.3
527,494 + CCNA_03885 0.32 -1.2
527,502 - CCNA_03885 0.33 -0.6
527,549 - CCNA_03885 0.41 +1.2
527,622 + CCNA_03885 0.52 +1.1
527,629 - CCNA_03885 0.53 -0.6
527,638 + CCNA_03885 0.54 +0.9
527,645 + CCNA_03885 0.55 +3.2
527,645 + CCNA_03885 0.55 +3.3
527,709 - CCNA_03885 0.65 -1.3
527,709 - CCNA_03885 0.65 -1.7
527,740 + CCNA_03885 0.70 +1.2
527,812 + CCNA_03885 0.81 -0.9
527,815 - CCNA_03885 0.82 -1.9
527,830 - CCNA_03885 0.84 -0.2
527,844 + CCNA_03885 0.86 -1.0
527,844 + CCNA_03885 0.86 -0.9
527,845 + CCNA_03885 0.86 +1.2
527,852 - CCNA_03885 0.87 -1.5
527,858 - CCNA_03885 0.88 -1.3
527,898 + -1.9
527,900 + +1.4
527,900 + +0.2
527,900 + -1.6
527,900 + +0.6
527,900 + +0.4
527,908 + +0.2
527,908 + +0.7
527,973 - +0.9
527,978 - +0.2
527,984 - -0.9
528,003 + -0.9
528,010 - +0.1
528,083 + +0.2
528,110 + -0.4
528,116 + -0.9
528,124 - -0.3
528,124 - +0.8
528,124 - -2.2
528,130 + +0.5
528,143 + +0.3
528,151 - -2.4
528,170 + CCNA_00514 0.11 +0.5
528,179 - CCNA_00514 0.12 -0.2
528,205 + CCNA_00514 0.15 +1.3
528,224 - CCNA_00514 0.18 -0.5
528,260 - CCNA_00514 0.22 +0.5
528,266 + CCNA_00514 0.23 +1.1
528,272 - CCNA_00514 0.23 -1.3
528,302 - CCNA_00514 0.27 +0.9
528,311 + CCNA_00514 0.28 +1.1
528,311 + CCNA_00514 0.28 +0.4
528,319 - CCNA_00514 0.29 -0.6
528,330 + CCNA_00514 0.30 -1.5
528,337 - CCNA_00514 0.31 -0.5
528,338 - CCNA_00514 0.31 +0.9
528,369 + CCNA_00514 0.35 -0.2
528,405 + CCNA_00514 0.39 +1.3
528,405 + CCNA_00514 0.39 -0.9
528,413 - CCNA_00514 0.40 +0.5
528,424 + CCNA_00514 0.42 -1.3
528,424 + CCNA_00514 0.42 +0.4
528,432 - CCNA_00514 0.43 +1.2
528,432 - CCNA_00514 0.43 -0.3
528,436 + CCNA_00514 0.43 -1.3
528,436 + CCNA_00514 0.43 -0.9
528,621 + CCNA_00514 0.65 +0.2
528,645 - CCNA_00514 0.68 -1.4
528,645 - CCNA_00514 0.68 -1.6
528,662 + CCNA_00514 0.70 -1.4
528,690 + CCNA_00514 0.74 +0.1
528,690 + CCNA_00514 0.74 -0.7
528,698 - CCNA_00514 0.75 -0.5
528,713 - CCNA_00514 0.76 -1.8
528,757 - CCNA_00514 0.82 -0.1
528,777 + CCNA_00514 0.84 -0.4
528,802 - CCNA_00514 0.87 -0.5
528,832 + -0.4
528,856 + +2.2
528,864 + +0.9
528,864 - -0.7
528,878 - -0.0
528,902 + +1.1
528,910 - -1.2
528,915 - +2.1

Or see this region's nucleotide sequence