Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03717 and CCNA_R0090 are separated by 155 nucleotides CCNA_R0090 and CCNA_03718 are separated by 169 nucleotides CCNA_03718 and CCNA_03719 are separated by 200 nucleotides
CCNA_03716: CCNA_03716 - LptC-related lipopolysaccharide assembly protein, at 3,881,363 to 3,882,025
_03716
CCNA_03717: CCNA_03717 - ribonuclease D, at 3,881,992 to 3,882,609
_03717
CCNA_R0090: CCNA_R0090 - tRNA-Leu, at 3,882,765 to 3,882,851
_R0090
CCNA_03718: CCNA_03718 - NADH-ubiquinone oxidoreductase subunit, at 3,883,021 to 3,883,980
_03718
CCNA_03719: CCNA_03719 - undecaprenyl diphosphatase, at 3,884,181 to 3,884,981
_03719
Position (kb)
3883
3884 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3882.610 kb on + strand at 3882.611 kb on + strand at 3882.617 kb on - strand at 3882.618 kb on - strand at 3882.619 kb on - strand at 3882.672 kb on - strand at 3882.690 kb on - strand at 3882.764 kb on - strand at 3882.771 kb on - strand at 3882.967 kb on + strand at 3882.989 kb on - strand at 3883.001 kb on - strand at 3883.003 kb on - strand at 3883.013 kb on + strand at 3883.067 kb on + strand at 3883.086 kb on + strand at 3883.094 kb on - strand at 3883.110 kb on - strand at 3883.115 kb on - strand at 3883.124 kb on + strand, within CCNA_03718 at 3883.124 kb on + strand, within CCNA_03718 at 3883.125 kb on + strand, within CCNA_03718 at 3883.170 kb on + strand, within CCNA_03718 at 3883.170 kb on + strand, within CCNA_03718 at 3883.170 kb on + strand, within CCNA_03718 at 3883.170 kb on + strand, within CCNA_03718 at 3883.170 kb on + strand, within CCNA_03718 at 3883.178 kb on - strand, within CCNA_03718 at 3883.178 kb on - strand, within CCNA_03718 at 3883.178 kb on - strand, within CCNA_03718 at 3883.178 kb on - strand, within CCNA_03718 at 3883.178 kb on - strand, within CCNA_03718 at 3883.192 kb on - strand, within CCNA_03718 at 3883.193 kb on - strand, within CCNA_03718 at 3883.224 kb on + strand, within CCNA_03718 at 3883.227 kb on - strand, within CCNA_03718 at 3883.229 kb on + strand, within CCNA_03718 at 3883.231 kb on + strand, within CCNA_03718 at 3883.231 kb on + strand, within CCNA_03718 at 3883.232 kb on - strand, within CCNA_03718 at 3883.239 kb on - strand, within CCNA_03718 at 3883.239 kb on - strand, within CCNA_03718 at 3883.239 kb on - strand, within CCNA_03718 at 3883.241 kb on + strand, within CCNA_03718 at 3883.249 kb on - strand, within CCNA_03718 at 3883.263 kb on + strand, within CCNA_03718 at 3883.263 kb on + strand, within CCNA_03718 at 3883.271 kb on - strand, within CCNA_03718 at 3883.276 kb on + strand, within CCNA_03718 at 3883.294 kb on + strand, within CCNA_03718 at 3883.301 kb on + strand, within CCNA_03718 at 3883.301 kb on + strand, within CCNA_03718 at 3883.307 kb on - strand, within CCNA_03718 at 3883.351 kb on + strand, within CCNA_03718 at 3883.357 kb on + strand, within CCNA_03718 at 3883.364 kb on - strand, within CCNA_03718 at 3883.381 kb on + strand, within CCNA_03718 at 3883.389 kb on - strand, within CCNA_03718 at 3883.389 kb on - strand, within CCNA_03718 at 3883.399 kb on + strand, within CCNA_03718 at 3883.410 kb on + strand, within CCNA_03718 at 3883.410 kb on + strand, within CCNA_03718 at 3883.425 kb on - strand, within CCNA_03718 at 3883.430 kb on - strand, within CCNA_03718 at 3883.444 kb on + strand, within CCNA_03718 at 3883.452 kb on - strand, within CCNA_03718 at 3883.452 kb on - strand, within CCNA_03718 at 3883.468 kb on - strand, within CCNA_03718 at 3883.470 kb on - strand, within CCNA_03718 at 3883.646 kb on + strand, within CCNA_03718 at 3883.701 kb on - strand, within CCNA_03718 at 3883.704 kb on + strand, within CCNA_03718 at 3883.704 kb on + strand, within CCNA_03718 at 3883.735 kb on + strand, within CCNA_03718 at 3883.735 kb on + strand, within CCNA_03718 at 3883.740 kb on + strand, within CCNA_03718 at 3883.743 kb on - strand, within CCNA_03718 at 3883.748 kb on - strand, within CCNA_03718 at 3883.748 kb on - strand, within CCNA_03718 at 3883.761 kb on + strand, within CCNA_03718 at 3883.761 kb on + strand, within CCNA_03718 at 3883.830 kb on + strand, within CCNA_03718 at 3883.852 kb on + strand, within CCNA_03718 at 3883.866 kb on - strand, within CCNA_03718 at 3883.872 kb on + strand, within CCNA_03718 at 3883.912 kb on + strand at 3883.912 kb on + strand at 3883.922 kb on + strand at 3883.922 kb on + strand at 3883.935 kb on + strand at 3883.943 kb on - strand at 3883.961 kb on - strand at 3883.983 kb on - strand at 3884.073 kb on + strand at 3884.103 kb on - strand at 3884.129 kb on + strand at 3884.130 kb on + strand at 3884.137 kb on - strand at 3884.137 kb on - strand at 3884.191 kb on + strand at 3884.191 kb on + strand at 3884.191 kb on + strand at 3884.194 kb on - strand at 3884.199 kb on - strand at 3884.199 kb on - strand at 3884.199 kb on - strand at 3884.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 3,882,610 + +1.3 3,882,611 + +0.5 3,882,617 - -0.6 3,882,618 - +0.2 3,882,619 - +1.0 3,882,672 - +0.9 3,882,690 - +2.3 3,882,764 - +2.9 3,882,771 - +3.0 3,882,967 + +4.0 3,882,989 - +1.9 3,883,001 - +2.9 3,883,003 - +1.7 3,883,013 + +0.2 3,883,067 + +3.9 3,883,086 + +4.1 3,883,094 - +3.8 3,883,110 - +2.7 3,883,115 - +2.1 3,883,124 + CCNA_03718 0.11 +4.1 3,883,124 + CCNA_03718 0.11 +4.0 3,883,125 + CCNA_03718 0.11 +4.3 3,883,170 + CCNA_03718 0.16 +4.1 3,883,170 + CCNA_03718 0.16 +4.3 3,883,170 + CCNA_03718 0.16 +4.6 3,883,170 + CCNA_03718 0.16 +4.5 3,883,170 + CCNA_03718 0.16 +4.2 3,883,178 - CCNA_03718 0.16 +1.9 3,883,178 - CCNA_03718 0.16 +2.1 3,883,178 - CCNA_03718 0.16 +1.3 3,883,178 - CCNA_03718 0.16 +3.1 3,883,178 - CCNA_03718 0.16 +2.0 3,883,192 - CCNA_03718 0.18 +0.7 3,883,193 - CCNA_03718 0.18 +3.2 3,883,224 + CCNA_03718 0.21 +4.4 3,883,227 - CCNA_03718 0.21 +2.3 3,883,229 + CCNA_03718 0.22 +4.9 3,883,231 + CCNA_03718 0.22 +4.1 3,883,231 + CCNA_03718 0.22 +4.4 3,883,232 - CCNA_03718 0.22 +1.9 3,883,239 - CCNA_03718 0.23 +0.6 3,883,239 - CCNA_03718 0.23 +0.3 3,883,239 - CCNA_03718 0.23 +1.3 3,883,241 + CCNA_03718 0.23 +4.1 3,883,249 - CCNA_03718 0.24 +2.0 3,883,263 + CCNA_03718 0.25 +4.2 3,883,263 + CCNA_03718 0.25 +4.8 3,883,271 - CCNA_03718 0.26 +0.8 3,883,276 + CCNA_03718 0.27 +4.3 3,883,294 + CCNA_03718 0.28 +4.0 3,883,301 + CCNA_03718 0.29 +4.2 3,883,301 + CCNA_03718 0.29 +4.4 3,883,307 - CCNA_03718 0.30 +0.8 3,883,351 + CCNA_03718 0.34 +4.5 3,883,357 + CCNA_03718 0.35 +4.4 3,883,364 - CCNA_03718 0.36 -0.3 3,883,381 + CCNA_03718 0.38 +4.6 3,883,389 - CCNA_03718 0.38 +1.8 3,883,389 - CCNA_03718 0.38 +0.9 3,883,399 + CCNA_03718 0.39 +4.1 3,883,410 + CCNA_03718 0.41 +4.8 3,883,410 + CCNA_03718 0.41 +4.5 3,883,425 - CCNA_03718 0.42 +1.4 3,883,430 - CCNA_03718 0.43 +1.3 3,883,444 + CCNA_03718 0.44 +4.3 3,883,452 - CCNA_03718 0.45 +1.7 3,883,452 - CCNA_03718 0.45 +2.7 3,883,468 - CCNA_03718 0.47 +2.5 3,883,470 - CCNA_03718 0.47 +2.7 3,883,646 + CCNA_03718 0.65 +4.9 3,883,701 - CCNA_03718 0.71 +1.5 3,883,704 + CCNA_03718 0.71 +3.9 3,883,704 + CCNA_03718 0.71 +4.5 3,883,735 + CCNA_03718 0.74 +4.8 3,883,735 + CCNA_03718 0.74 +4.7 3,883,740 + CCNA_03718 0.75 +4.9 3,883,743 - CCNA_03718 0.75 -0.5 3,883,748 - CCNA_03718 0.76 +3.2 3,883,748 - CCNA_03718 0.76 +2.8 3,883,761 + CCNA_03718 0.77 +3.6 3,883,761 + CCNA_03718 0.77 +4.2 3,883,830 + CCNA_03718 0.84 +4.7 3,883,852 + CCNA_03718 0.87 +4.6 3,883,866 - CCNA_03718 0.88 +2.9 3,883,872 + CCNA_03718 0.89 +4.7 3,883,912 + +4.7 3,883,912 + +4.6 3,883,922 + +3.7 3,883,922 + +3.4 3,883,935 + +4.4 3,883,943 - +0.7 3,883,961 - -1.3 3,883,983 - +1.6 3,884,073 + +2.5 3,884,103 - -1.8 3,884,129 + +2.2 3,884,130 + +2.3 3,884,137 - -0.1 3,884,137 - +0.9 3,884,191 + +0.3 3,884,191 + -0.2 3,884,191 + +0.9 3,884,194 - +0.1 3,884,199 - +0.9 3,884,199 - +1.1 3,884,199 - +2.8 3,884,199 - +1.6
Or see this region's nucleotide sequence