Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03497

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
3,655,068	+				-0.9
3,655,068	+				-1.1
3,655,068	+				+1.5
3,655,076	-				+0.2
3,655,076	-				+0.8
3,655,076	-				-0.3
3,655,102	+				+0.4
3,655,112	-				+1.3
3,655,229	+				-0.3
3,655,237	-		CCNA_03496	0.10	+0.4
3,655,449	+		CCNA_03496	0.38	-0.5
3,655,449	+		CCNA_03496	0.38	-0.3
3,655,457	-		CCNA_03496	0.39	+0.2
3,655,457	-		CCNA_03496	0.39	+1.4
3,655,471	+		CCNA_03496	0.41	-0.2
3,655,477	-		CCNA_03496	0.42	+1.1
3,655,490	-		CCNA_03496	0.43	+1.5
3,655,497	-		CCNA_03496	0.44	+1.5
3,655,505	+		CCNA_03496	0.45	+0.5
3,655,522	+		CCNA_03496	0.47	+0.1
3,655,523	-		CCNA_03496	0.48	-1.8
3,655,544	-		CCNA_03496	0.50	-2.1
3,655,593	-		CCNA_03496	0.57	+1.0
3,655,611	-		CCNA_03496	0.59	+1.6
3,655,626	+		CCNA_03496	0.61	+0.7
3,655,626	+		CCNA_03496	0.61	+0.4
3,655,634	-		CCNA_03496	0.62	-0.2
3,655,634	-		CCNA_03496	0.62	+1.5
3,655,634	-		CCNA_03496	0.62	+1.0
3,655,634	-		CCNA_03496	0.62	+1.0
3,655,664	-		CCNA_03496	0.66	+1.9
3,655,669	-		CCNA_03496	0.67	+0.5
3,655,669	-		CCNA_03496	0.67	+0.8
3,655,674	-		CCNA_03496	0.67	+0.0
3,655,754	-				+4.1
3,655,757	-		CCNA_03496	0.78	+0.1
3,655,816	+		CCNA_03496	0.86	-0.6
3,655,816	+		CCNA_03496	0.86	-0.2
3,655,824	-		CCNA_03496	0.87	+0.4
3,655,852	+				+0.1
3,655,863	+				+0.1
3,655,871	-				+1.0
3,655,893	-				-0.2
3,656,065	+				+2.1
3,656,078	-				-2.3
3,656,099	+				-0.0
3,656,113	+		CCNA_03497	0.11	+2.7
3,656,113	+		CCNA_03497	0.11	+2.8
3,656,121	-		CCNA_03497	0.13	+1.2
3,656,123	+		CCNA_03497	0.14	-1.1
3,656,131	-		CCNA_03497	0.15	-0.6
3,656,158	-		CCNA_03497	0.21	+0.1
3,656,168	-		CCNA_03497	0.24	-0.5
3,656,177	-		CCNA_03497	0.26	-1.6
3,656,193	+		CCNA_03497	0.29	+0.6
3,656,199	+		CCNA_03497	0.30	+1.5
3,656,201	-		CCNA_03497	0.31	+1.5
3,656,207	-		CCNA_03497	0.32	+0.3
3,656,216	-		CCNA_03497	0.34	-0.2
3,656,217	-		CCNA_03497	0.34	+1.0
3,656,217	-		CCNA_03497	0.34	+0.7
3,656,247	+		CCNA_03497	0.41	-0.6
3,656,286	+		CCNA_03497	0.50	+0.6
3,656,294	+		CCNA_03497	0.51	-0.6
3,656,338	+		CCNA_03497	0.61	+2.9
3,656,338	+		CCNA_03497	0.61	+1.5
3,656,338	+		CCNA_03497	0.61	+2.5
3,656,338	+		CCNA_03497	0.61	+2.1
3,656,338	+		CCNA_03497	0.61	+2.2
3,656,346	-		CCNA_03497	0.63	-1.8
3,656,346	-		CCNA_03497	0.63	-0.2
3,656,346	-		CCNA_03497	0.63	-0.8
3,656,356	-		CCNA_03497	0.65	+0.4
3,656,370	+		CCNA_03497	0.68	+0.4
3,656,441	+		CCNA_03497	0.84	+0.5
3,656,504	+				-1.6
3,656,504	+				-0.5
3,656,507	+				+0.5
3,656,519	+				+2.7
3,656,519	+				+2.9
3,656,519	+				+3.1
3,656,541	+		CCNA_03498	0.10	+4.1
3,656,552	+		CCNA_03498	0.14	+2.6
3,656,576	+		CCNA_03498	0.22	+3.1
3,656,612	+		CCNA_03498	0.34	+2.8
3,656,612	+		CCNA_03498	0.34	+2.1
3,656,612	+		CCNA_03498	0.34	+3.1
3,656,612	+		CCNA_03498	0.34	+3.1
3,656,647	+		CCNA_03498	0.46	+3.0
3,656,647	+		CCNA_03498	0.46	+2.8
3,656,647	+		CCNA_03498	0.46	+3.0
3,656,655	+		CCNA_03498	0.49	+3.0
3,656,655	+		CCNA_03498	0.49	+2.9
3,656,728	+		CCNA_03498	0.73	+2.7
3,656,747	+		CCNA_03498	0.80	+2.2
3,656,793	+				+1.4
3,656,801	-				-1.4
3,656,817	+				+0.2
3,656,817	+				-0.8
3,656,817	+				+0.1
3,656,817	+				-0.2
3,656,825	-				-1.2
3,656,847	+				-1.1
3,656,857	+				-0.1
3,656,857	+				+0.1
3,656,857	+				-1.6
3,656,874	+				+0.7
3,656,874	+				-2.1
3,656,879	+				-1.3
3,656,882	-		CCNA_03499	0.10	-0.5
3,656,882	-		CCNA_03499	0.10	+0.9
3,656,882	-		CCNA_03499	0.10	+0.1
3,656,882	-		CCNA_03499	0.10	-0.5
3,656,912	-		CCNA_03499	0.20	+2.0
3,656,912	-		CCNA_03499	0.20	-1.6
3,656,946	-		CCNA_03499	0.31	-0.3
3,656,951	-		CCNA_03499	0.33	-0.7
3,656,953	+		CCNA_03499	0.33	+0.9
3,656,956	-		CCNA_03499	0.34	+1.1
3,656,961	-		CCNA_03499	0.36	-1.0
3,656,989	+		CCNA_03499	0.45	-0.5
3,657,002	-		CCNA_03499	0.49	+1.7
3,657,080	+		CCNA_03499	0.74	+1.2
3,657,080	+		CCNA_03499	0.74	+1.6
3,657,140	+				+1.1
3,657,140	+				+1.0
3,657,140	+				+0.8
3,657,140	+				-0.6
3,657,148	-				+0.2
3,657,148	-				-0.1
3,657,148	-				+0.2
3,657,153	+				-0.4
3,657,243	-				+2.0
3,657,245	+				-0.3
3,657,245	+				+1.1
3,657,245	+				+0.6
3,657,253	-				-0.6
3,657,283	+				+0.4
3,657,283	+				+0.9
3,657,285	-				-0.6
3,657,285	-				-0.4
3,657,291	-				-3.2
3,657,296	-		CCNA_03500	0.10	-0.3
3,657,323	-		CCNA_03500	0.12	+1.1
3,657,330	+		CCNA_03500	0.12	+4.1
3,657,350	-		CCNA_03500	0.14	+0.9
3,657,355	-		CCNA_03500	0.14	+0.6
3,657,383	+		CCNA_03500	0.16	+1.5
3,657,386	-		CCNA_03500	0.16	-1.7
3,657,398	+		CCNA_03500	0.17	+1.4
3,657,410	+		CCNA_03500	0.18	-0.4
3,657,432	-		CCNA_03500	0.20	-0.9
3,657,456	-		CCNA_03500	0.21	+1.3
3,657,458	+		CCNA_03500	0.21	-0.2
3,657,463	-		CCNA_03500	0.22	+0.8
3,657,471	+		CCNA_03500	0.22	+1.2
3,657,479	-		CCNA_03500	0.23	-0.0
3,657,506	+		CCNA_03500	0.25	-1.0