Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03307 and CCNA_03308 are separated by 134 nucleotides CCNA_03308 and CCNA_03309 are separated by 48 nucleotides CCNA_03309 and CCNA_03310 are separated by 78 nucleotides CCNA_03310 and CCNA_03311 are separated by 10 nucleotides
CCNA_03307: CCNA_03307 - hypothetical protein, at 3,484,065 to 3,484,331
_03307
CCNA_03308: CCNA_03308 - hypothetical protein, at 3,484,466 to 3,485,245
_03308
CCNA_03309: CCNA_03309 - homoserine O-acetyltransferase, at 3,485,294 to 3,486,370
_03309
CCNA_03310: CCNA_03310 - transcription antitermination protein NusG, at 3,486,449 to 3,487,006
_03310
CCNA_03311: CCNA_03311 - protein translocase subunit SecE, at 3,487,017 to 3,487,334
_03311
Position (kb)
3485
3486
3487 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3484.315 kb on + strand at 3484.315 kb on + strand at 3484.323 kb on - strand at 3484.327 kb on + strand at 3484.346 kb on - strand at 3484.361 kb on + strand at 3484.361 kb on + strand at 3484.361 kb on + strand at 3484.369 kb on + strand at 3484.369 kb on - strand at 3484.377 kb on - strand at 3484.466 kb on - strand at 3484.468 kb on - strand at 3484.468 kb on - strand at 3484.476 kb on + strand at 3484.488 kb on + strand at 3484.557 kb on + strand, within CCNA_03308 at 3484.565 kb on - strand, within CCNA_03308 at 3484.582 kb on + strand, within CCNA_03308 at 3484.590 kb on - strand, within CCNA_03308 at 3484.590 kb on - strand, within CCNA_03308 at 3484.612 kb on + strand, within CCNA_03308 at 3484.697 kb on - strand, within CCNA_03308 at 3484.700 kb on + strand, within CCNA_03308 at 3484.700 kb on + strand, within CCNA_03308 at 3484.700 kb on + strand, within CCNA_03308 at 3484.705 kb on + strand, within CCNA_03308 at 3484.707 kb on + strand, within CCNA_03308 at 3484.707 kb on + strand, within CCNA_03308 at 3484.715 kb on - strand, within CCNA_03308 at 3484.744 kb on - strand, within CCNA_03308 at 3484.791 kb on + strand, within CCNA_03308 at 3484.860 kb on + strand, within CCNA_03308 at 3484.892 kb on + strand, within CCNA_03308 at 3484.893 kb on + strand, within CCNA_03308 at 3484.900 kb on - strand, within CCNA_03308 at 3484.920 kb on + strand, within CCNA_03308 at 3484.920 kb on + strand, within CCNA_03308 at 3484.928 kb on - strand, within CCNA_03308 at 3484.938 kb on - strand, within CCNA_03308 at 3484.944 kb on + strand, within CCNA_03308 at 3484.953 kb on - strand, within CCNA_03308 at 3485.042 kb on - strand, within CCNA_03308 at 3485.057 kb on + strand, within CCNA_03308 at 3485.060 kb on - strand, within CCNA_03308 at 3485.064 kb on - strand, within CCNA_03308 at 3485.071 kb on - strand, within CCNA_03308 at 3485.086 kb on - strand, within CCNA_03308 at 3485.086 kb on - strand, within CCNA_03308 at 3485.123 kb on + strand, within CCNA_03308 at 3485.131 kb on - strand, within CCNA_03308 at 3485.131 kb on - strand, within CCNA_03308 at 3485.152 kb on + strand, within CCNA_03308 at 3485.183 kb on + strand at 3485.183 kb on + strand at 3485.183 kb on - strand at 3485.194 kb on - strand at 3485.239 kb on + strand at 3485.270 kb on + strand at 3485.270 kb on + strand at 3485.277 kb on - strand at 3485.278 kb on - strand at 3485.279 kb on - strand at 3485.291 kb on + strand at 3485.299 kb on - strand at 3485.315 kb on + strand at 3485.316 kb on + strand at 3485.323 kb on - strand at 3485.323 kb on - strand at 3485.323 kb on - strand at 3485.336 kb on + strand at 3485.358 kb on - strand at 3485.358 kb on - strand at 3485.358 kb on - strand at 3485.379 kb on - strand at 3485.408 kb on + strand, within CCNA_03309 at 3485.416 kb on + strand, within CCNA_03309 at 3485.453 kb on + strand, within CCNA_03309 at 3485.460 kb on - strand, within CCNA_03309 at 3485.540 kb on + strand, within CCNA_03309 at 3485.573 kb on - strand, within CCNA_03309 at 3485.586 kb on - strand, within CCNA_03309 at 3485.586 kb on - strand, within CCNA_03309 at 3485.606 kb on + strand, within CCNA_03309 at 3485.607 kb on - strand, within CCNA_03309 at 3485.619 kb on - strand, within CCNA_03309 at 3485.620 kb on + strand, within CCNA_03309 at 3485.683 kb on - strand, within CCNA_03309 at 3485.709 kb on + strand, within CCNA_03309 at 3485.723 kb on - strand, within CCNA_03309 at 3485.723 kb on - strand, within CCNA_03309 at 3485.742 kb on + strand, within CCNA_03309 at 3485.788 kb on - strand, within CCNA_03309 at 3485.815 kb on + strand, within CCNA_03309 at 3485.818 kb on - strand, within CCNA_03309 at 3485.823 kb on - strand, within CCNA_03309 at 3485.838 kb on + strand, within CCNA_03309 at 3485.846 kb on - strand, within CCNA_03309 at 3485.846 kb on - strand, within CCNA_03309 at 3485.861 kb on + strand, within CCNA_03309 at 3485.875 kb on - strand, within CCNA_03309 at 3485.881 kb on + strand, within CCNA_03309 at 3485.938 kb on - strand, within CCNA_03309 at 3485.944 kb on + strand, within CCNA_03309 at 3485.944 kb on + strand, within CCNA_03309 at 3485.949 kb on + strand, within CCNA_03309 at 3485.952 kb on - strand, within CCNA_03309 at 3485.957 kb on - strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.959 kb on + strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3485.967 kb on - strand, within CCNA_03309 at 3486.019 kb on + strand, within CCNA_03309 at 3486.062 kb on + strand, within CCNA_03309 at 3486.070 kb on - strand, within CCNA_03309 at 3486.098 kb on + strand, within CCNA_03309 at 3486.118 kb on + strand, within CCNA_03309 at 3486.118 kb on + strand, within CCNA_03309 at 3486.118 kb on + strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.126 kb on - strand, within CCNA_03309 at 3486.141 kb on + strand, within CCNA_03309 at 3486.152 kb on + strand, within CCNA_03309 at 3486.159 kb on + strand, within CCNA_03309 at 3486.167 kb on - strand, within CCNA_03309 at 3486.167 kb on - strand, within CCNA_03309 at 3486.174 kb on - strand, within CCNA_03309 at 3486.237 kb on - strand, within CCNA_03309 at 3486.253 kb on + strand, within CCNA_03309 at 3486.277 kb on + strand at 3486.283 kb on - strand at 3486.283 kb on - strand at 3486.283 kb on - strand at 3486.316 kb on + strand at 3486.339 kb on - strand at 3486.344 kb on + strand at 3486.349 kb on + strand at 3486.355 kb on + strand at 3486.375 kb on - strand at 3486.436 kb on + strand at 3486.436 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 3,484,315 + +0.3 3,484,315 + +1.3 3,484,323 - +2.3 3,484,327 + +1.9 3,484,346 - -1.3 3,484,361 + -1.6 3,484,361 + +0.7 3,484,361 + +2.0 3,484,369 + -2.0 3,484,369 - -1.8 3,484,377 - -0.3 3,484,466 - +0.1 3,484,468 - +1.0 3,484,468 - -0.7 3,484,476 + -0.8 3,484,488 + +2.1 3,484,557 + CCNA_03308 0.12 -2.2 3,484,565 - CCNA_03308 0.13 -0.2 3,484,582 + CCNA_03308 0.15 -0.7 3,484,590 - CCNA_03308 0.16 +1.5 3,484,590 - CCNA_03308 0.16 -1.6 3,484,612 + CCNA_03308 0.19 -0.6 3,484,697 - CCNA_03308 0.30 +0.8 3,484,700 + CCNA_03308 0.30 -0.0 3,484,700 + CCNA_03308 0.30 -0.3 3,484,700 + CCNA_03308 0.30 +0.1 3,484,705 + CCNA_03308 0.31 -1.1 3,484,707 + CCNA_03308 0.31 -3.1 3,484,707 + CCNA_03308 0.31 +0.0 3,484,715 - CCNA_03308 0.32 +0.5 3,484,744 - CCNA_03308 0.36 -1.5 3,484,791 + CCNA_03308 0.42 +0.3 3,484,860 + CCNA_03308 0.51 +1.1 3,484,892 + CCNA_03308 0.55 +0.7 3,484,893 + CCNA_03308 0.55 +0.2 3,484,900 - CCNA_03308 0.56 -0.8 3,484,920 + CCNA_03308 0.58 -0.2 3,484,920 + CCNA_03308 0.58 -0.1 3,484,928 - CCNA_03308 0.59 +0.7 3,484,938 - CCNA_03308 0.61 -1.8 3,484,944 + CCNA_03308 0.61 -0.1 3,484,953 - CCNA_03308 0.62 -0.2 3,485,042 - CCNA_03308 0.74 +2.1 3,485,057 + CCNA_03308 0.76 +2.1 3,485,060 - CCNA_03308 0.76 -0.1 3,485,064 - CCNA_03308 0.77 +0.7 3,485,071 - CCNA_03308 0.78 +0.6 3,485,086 - CCNA_03308 0.79 -1.8 3,485,086 - CCNA_03308 0.79 -1.9 3,485,123 + CCNA_03308 0.84 +0.1 3,485,131 - CCNA_03308 0.85 -0.7 3,485,131 - CCNA_03308 0.85 -1.1 3,485,152 + CCNA_03308 0.88 +1.0 3,485,183 + -1.2 3,485,183 + +0.3 3,485,183 - +3.8 3,485,194 - +1.1 3,485,239 + -1.3 3,485,270 + +2.1 3,485,270 + +1.8 3,485,277 - -1.0 3,485,278 - -2.2 3,485,279 - -0.4 3,485,291 + +0.8 3,485,299 - -0.2 3,485,315 + -0.6 3,485,316 + +1.5 3,485,323 - -1.6 3,485,323 - +0.3 3,485,323 - -0.1 3,485,336 + -1.4 3,485,358 - +0.8 3,485,358 - +0.8 3,485,358 - +2.8 3,485,379 - +0.4 3,485,408 + CCNA_03309 0.11 -1.0 3,485,416 + CCNA_03309 0.11 +0.9 3,485,453 + CCNA_03309 0.15 +1.0 3,485,460 - CCNA_03309 0.15 +1.1 3,485,540 + CCNA_03309 0.23 +1.2 3,485,573 - CCNA_03309 0.26 +1.4 3,485,586 - CCNA_03309 0.27 -1.2 3,485,586 - CCNA_03309 0.27 -0.7 3,485,606 + CCNA_03309 0.29 -1.1 3,485,607 - CCNA_03309 0.29 +0.4 3,485,619 - CCNA_03309 0.30 +0.4 3,485,620 + CCNA_03309 0.30 +0.8 3,485,683 - CCNA_03309 0.36 -0.4 3,485,709 + CCNA_03309 0.39 -1.4 3,485,723 - CCNA_03309 0.40 +0.3 3,485,723 - CCNA_03309 0.40 +0.9 3,485,742 + CCNA_03309 0.42 +0.3 3,485,788 - CCNA_03309 0.46 -0.3 3,485,815 + CCNA_03309 0.48 +1.4 3,485,818 - CCNA_03309 0.49 +1.3 3,485,823 - CCNA_03309 0.49 +1.8 3,485,838 + CCNA_03309 0.51 -0.1 3,485,846 - CCNA_03309 0.51 -0.3 3,485,846 - CCNA_03309 0.51 -0.2 3,485,861 + CCNA_03309 0.53 +0.0 3,485,875 - CCNA_03309 0.54 -1.1 3,485,881 + CCNA_03309 0.55 +0.4 3,485,938 - CCNA_03309 0.60 +0.1 3,485,944 + CCNA_03309 0.60 +1.8 3,485,944 + CCNA_03309 0.60 -0.7 3,485,949 + CCNA_03309 0.61 +0.3 3,485,952 - CCNA_03309 0.61 -1.7 3,485,957 - CCNA_03309 0.62 -0.2 3,485,959 + CCNA_03309 0.62 +1.0 3,485,959 + CCNA_03309 0.62 +0.9 3,485,959 + CCNA_03309 0.62 +0.7 3,485,959 + CCNA_03309 0.62 +2.4 3,485,959 + CCNA_03309 0.62 +1.5 3,485,959 + CCNA_03309 0.62 +0.7 3,485,967 - CCNA_03309 0.62 -0.1 3,485,967 - CCNA_03309 0.62 -0.2 3,485,967 - CCNA_03309 0.62 -0.3 3,485,967 - CCNA_03309 0.62 +0.1 3,486,019 + CCNA_03309 0.67 +0.2 3,486,062 + CCNA_03309 0.71 +1.6 3,486,070 - CCNA_03309 0.72 +0.3 3,486,098 + CCNA_03309 0.75 +0.9 3,486,118 + CCNA_03309 0.77 +0.1 3,486,118 + CCNA_03309 0.77 +0.5 3,486,118 + CCNA_03309 0.77 +0.1 3,486,126 - CCNA_03309 0.77 +0.3 3,486,126 - CCNA_03309 0.77 +0.4 3,486,126 - CCNA_03309 0.77 -0.2 3,486,126 - CCNA_03309 0.77 -1.3 3,486,126 - CCNA_03309 0.77 +0.4 3,486,126 - CCNA_03309 0.77 -0.2 3,486,141 + CCNA_03309 0.79 +0.7 3,486,152 + CCNA_03309 0.80 +0.4 3,486,159 + CCNA_03309 0.80 +0.4 3,486,167 - CCNA_03309 0.81 +1.5 3,486,167 - CCNA_03309 0.81 +0.6 3,486,174 - CCNA_03309 0.82 +1.9 3,486,237 - CCNA_03309 0.88 -1.8 3,486,253 + CCNA_03309 0.89 -0.4 3,486,277 + +1.1 3,486,283 - -1.8 3,486,283 - -0.2 3,486,283 - -0.9 3,486,316 + +1.0 3,486,339 - -1.4 3,486,344 + -0.3 3,486,349 + +1.1 3,486,355 + +0.5 3,486,375 - -1.9 3,486,436 + +0.4 3,486,436 + +0.8
Or see this region's nucleotide sequence