Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03119

Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Benzalkonium Chloride 0.0001 mg/ml
3,266,485	-		CCNA_03117	0.36	-1.7
3,266,485	-		CCNA_03117	0.36	-0.4
3,266,487	+		CCNA_03117	0.37	+2.2
3,266,489	+		CCNA_03117	0.37	+0.7
3,266,502	+		CCNA_03117	0.39	+1.0
3,266,544	-		CCNA_03117	0.47	+0.6
3,266,566	+		CCNA_03117	0.51	+0.6
3,266,566	+		CCNA_03117	0.51	-0.6
3,266,566	+		CCNA_03117	0.51	+0.5
3,266,574	-		CCNA_03117	0.53	+2.6
3,266,607	+		CCNA_03117	0.59	-0.6
3,266,623	+		CCNA_03117	0.62	+1.8
3,266,711	-		CCNA_03117	0.78	+0.5
3,266,740	-		CCNA_03117	0.83	-2.9
3,266,749	-		CCNA_03117	0.85	+1.0
3,266,772	-		CCNA_03117	0.89	+1.3
3,266,807	+				-0.3
3,266,807	+				-0.4
3,266,816	-				-0.2
3,266,833	-				+0.3
3,266,833	-				-1.0
3,266,844	+				+0.8
3,266,881	+				+0.0
3,266,881	+				+0.1
3,266,881	+				+1.1
3,266,890	-				+0.1
3,266,959	-				-1.3
3,266,962	+				+0.9
3,266,970	-				+0.6
3,266,970	-				+0.5
3,266,985	-				+1.6
3,266,999	+				+0.0
3,267,007	-				-2.5
3,267,007	-				+0.9
3,267,007	-				+0.7
3,267,041	+				-1.8
3,267,079	+		CCNA_03118	0.15	+1.1
3,267,092	-				+2.9
3,267,132	-		CCNA_03118	0.37	-0.4
3,267,180	-		CCNA_03118	0.57	-1.0
3,267,210	-		CCNA_03118	0.70	+0.2
3,267,213	+		CCNA_03118	0.71	-0.3
3,267,214	+		CCNA_03118	0.71	-1.1
3,267,221	-		CCNA_03118	0.74	+1.1
3,267,259	+				+0.7
3,267,281	+				+0.6
3,267,382	+				+0.3
3,267,385	-				-0.8
3,267,397	-				-0.7
3,267,407	-				+3.9
3,267,433	+				+2.2
3,267,436	-				+1.3
3,267,436	-				+1.8
3,267,463	+				+0.4
3,267,482	+				+0.7
3,267,490	-				+1.4
3,267,550	-		CCNA_03119	0.17	+1.5
3,267,576	+		CCNA_03119	0.23	+0.7
3,267,584	-		CCNA_03119	0.25	+1.3
3,267,584	-		CCNA_03119	0.25	+1.3
3,267,604	+		CCNA_03119	0.30	-0.1
3,267,615	-		CCNA_03119	0.33	+1.4
3,267,621	-		CCNA_03119	0.34	+0.6
3,267,731	-		CCNA_03119	0.62	+0.3
3,267,826	-		CCNA_03119	0.86	+0.7
3,267,868	-				+0.7
3,267,899	-				+1.7
3,267,904	-				-0.2
3,267,976	-				+0.7
3,267,986	+				-0.1
3,267,991	+				+0.8
3,267,991	+				+0.6
3,267,999	-				-1.6
3,268,024	+				+0.6
3,268,032	-				-0.4
3,268,032	-				+0.7
3,268,032	-				-0.3
3,268,045	+				+3.6
3,268,072	+				-0.9
3,268,080	-				+0.7
3,268,080	-				-1.4
3,268,080	-				-1.3
3,268,090	-				-1.0
3,268,097	+				+1.9
3,268,097	+				+1.2
3,268,101	+				+0.9
3,268,110	-				+1.4
3,268,137	+		CCNA_03120	0.13	+2.2
3,268,138	+		CCNA_03120	0.13	+2.1
3,268,153	-		CCNA_03120	0.16	+1.3
3,268,158	+		CCNA_03120	0.17	+0.6
3,268,166	-		CCNA_03120	0.19	+1.0
3,268,200	-		CCNA_03120	0.26	-1.6
3,268,273	-		CCNA_03120	0.42	-1.0
3,268,287	+		CCNA_03120	0.44	+1.8
3,268,288	+		CCNA_03120	0.45	+2.2
3,268,290	-		CCNA_03120	0.45	+1.7
3,268,295	-		CCNA_03120	0.46	+0.5
3,268,295	-		CCNA_03120	0.46	+1.0
3,268,295	-		CCNA_03120	0.46	-0.8
3,268,310	-		CCNA_03120	0.49	+1.0
3,268,315	+		CCNA_03120	0.50	+2.4
3,268,320	+		CCNA_03120	0.51	+1.8
3,268,328	-		CCNA_03120	0.53	-1.8
3,268,383	-		CCNA_03120	0.65	+0.2
3,268,383	-		CCNA_03120	0.65	-1.0
3,268,387	-		CCNA_03120	0.65	-0.3
3,268,397	+		CCNA_03120	0.68	+1.9
3,268,415	-		CCNA_03120	0.71	+0.1
3,268,415	-		CCNA_03120	0.71	-1.1
3,268,428	+		CCNA_03120	0.74	+1.9
3,268,464	+		CCNA_03120	0.82	+2.2
3,268,469	-		CCNA_03120	0.83	+1.0
3,268,481	-		CCNA_03120	0.85	+0.3
3,268,539	-				-2.5
3,268,590	+		CCNA_03121	0.12	+1.4
3,268,594	+		CCNA_03121	0.13	+1.0
3,268,637	-		CCNA_03121	0.30	-1.7
3,268,647	-		CCNA_03121	0.34	-2.2
3,268,669	+		CCNA_03121	0.42	+1.4
3,268,671	-		CCNA_03121	0.43	+0.9
3,268,677	-		CCNA_03121	0.45	+1.0
3,268,711	-		CCNA_03121	0.58	-0.7
3,268,743	+		CCNA_03121	0.70	+0.3
3,268,762	-		CCNA_03121	0.78	-1.4
3,268,787	-		CCNA_03121	0.87	-0.1
3,268,798	-				+0.6
3,268,843	-				+0.9
3,268,880	+		CCNA_03122	0.11	-1.3