Experiment: PYE with Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_R0055 and CCNA_02378 are separated by 149 nucleotides CCNA_02378 and CCNA_02379 are separated by 69 nucleotides CCNA_02379 and CCNA_02380 are separated by 3 nucleotides CCNA_02380 and CCNA_02381 are separated by 177 nucleotides
CCNA_R0055: CCNA_R0055 - tRNA-Ile, at 2,521,468 to 2,521,543
_R0055
CCNA_02378: CCNA_02378 - SIMPL family protein, at 2,521,693 to 2,522,439
_02378
CCNA_02379: CCNA_02379 - hypothetical protein, at 2,522,509 to 2,522,988
_02379
CCNA_02380: CCNA_02380 - aspartate 1-decarboxylase, at 2,522,992 to 2,523,348
_02380
CCNA_02381: CCNA_02381 - hypothetical protein, at 2,523,526 to 2,524,176
_02381
Position (kb)
2522
2523 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2521.542 kb on - strand at 2521.549 kb on + strand at 2521.557 kb on - strand at 2521.557 kb on - strand at 2521.600 kb on + strand at 2521.600 kb on + strand at 2521.608 kb on - strand at 2521.608 kb on - strand at 2521.621 kb on - strand at 2521.665 kb on + strand at 2521.665 kb on + strand at 2521.670 kb on + strand at 2521.678 kb on - strand at 2521.748 kb on - strand at 2521.796 kb on - strand, within CCNA_02378 at 2521.817 kb on + strand, within CCNA_02378 at 2521.817 kb on + strand, within CCNA_02378 at 2521.868 kb on + strand, within CCNA_02378 at 2521.872 kb on - strand, within CCNA_02378 at 2521.928 kb on - strand, within CCNA_02378 at 2521.944 kb on + strand, within CCNA_02378 at 2522.017 kb on + strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.032 kb on - strand, within CCNA_02378 at 2522.037 kb on - strand, within CCNA_02378 at 2522.042 kb on - strand, within CCNA_02378 at 2522.100 kb on + strand, within CCNA_02378 at 2522.113 kb on - strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.173 kb on - strand, within CCNA_02378 at 2522.173 kb on - strand, within CCNA_02378 at 2522.173 kb on - strand, within CCNA_02378 at 2522.188 kb on - strand, within CCNA_02378 at 2522.217 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.245 kb on + strand, within CCNA_02378 at 2522.263 kb on + strand, within CCNA_02378 at 2522.265 kb on + strand, within CCNA_02378 at 2522.273 kb on - strand, within CCNA_02378 at 2522.307 kb on + strand, within CCNA_02378 at 2522.328 kb on - strand, within CCNA_02378 at 2522.343 kb on - strand, within CCNA_02378 at 2522.398 kb on + strand at 2522.470 kb on - strand at 2522.484 kb on - strand at 2522.491 kb on - strand at 2522.502 kb on + strand at 2522.600 kb on - strand, within CCNA_02379 at 2522.606 kb on - strand, within CCNA_02379 at 2522.615 kb on + strand, within CCNA_02379 at 2522.623 kb on - strand, within CCNA_02379 at 2522.629 kb on + strand, within CCNA_02379 at 2522.661 kb on - strand, within CCNA_02379 at 2522.678 kb on - strand, within CCNA_02379 at 2522.792 kb on - strand, within CCNA_02379 at 2522.845 kb on + strand, within CCNA_02379 at 2522.845 kb on + strand, within CCNA_02379 at 2522.845 kb on + strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.868 kb on - strand, within CCNA_02379 at 2522.878 kb on - strand, within CCNA_02379 at 2522.881 kb on + strand, within CCNA_02379 at 2522.884 kb on - strand, within CCNA_02379 at 2522.903 kb on - strand, within CCNA_02379 at 2522.978 kb on - strand at 2523.155 kb on - strand, within CCNA_02380 at 2523.551 kb on - strand at 2523.629 kb on - strand, within CCNA_02381 at 2523.739 kb on - strand, within CCNA_02381 at 2523.772 kb on + strand, within CCNA_02381 at 2523.772 kb on + strand, within CCNA_02381 at 2523.847 kb on - strand, within CCNA_02381 at 2523.852 kb on + strand, within CCNA_02381 at 2523.858 kb on - strand, within CCNA_02381 at 2523.892 kb on + strand, within CCNA_02381 at 2523.907 kb on + strand, within CCNA_02381
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzalkonium Chloride 0.0001 mg/ml remove 2,521,542 - +0.5 2,521,549 + -1.7 2,521,557 - -1.9 2,521,557 - +0.3 2,521,600 + -0.5 2,521,600 + +2.1 2,521,608 - -0.2 2,521,608 - +0.2 2,521,621 - +0.6 2,521,665 + +1.1 2,521,665 + +0.6 2,521,670 + -1.0 2,521,678 - +0.7 2,521,748 - +0.1 2,521,796 - CCNA_02378 0.14 +0.4 2,521,817 + CCNA_02378 0.17 +0.6 2,521,817 + CCNA_02378 0.17 +1.3 2,521,868 + CCNA_02378 0.23 -0.5 2,521,872 - CCNA_02378 0.24 -1.5 2,521,928 - CCNA_02378 0.31 -0.1 2,521,944 + CCNA_02378 0.34 -1.4 2,522,017 + CCNA_02378 0.43 -0.3 2,522,024 + CCNA_02378 0.44 +0.9 2,522,024 + CCNA_02378 0.44 +0.5 2,522,032 - CCNA_02378 0.45 -0.9 2,522,037 - CCNA_02378 0.46 -0.9 2,522,042 - CCNA_02378 0.47 -0.9 2,522,100 + CCNA_02378 0.54 +1.0 2,522,113 - CCNA_02378 0.56 +2.3 2,522,165 + CCNA_02378 0.63 +0.9 2,522,165 + CCNA_02378 0.63 -0.8 2,522,165 + CCNA_02378 0.63 -0.3 2,522,173 - CCNA_02378 0.64 -1.3 2,522,173 - CCNA_02378 0.64 +1.0 2,522,173 - CCNA_02378 0.64 +0.1 2,522,188 - CCNA_02378 0.66 +0.8 2,522,217 + CCNA_02378 0.70 +1.1 2,522,232 + CCNA_02378 0.72 +0.3 2,522,232 + CCNA_02378 0.72 +1.6 2,522,232 + CCNA_02378 0.72 +2.5 2,522,240 - CCNA_02378 0.73 +2.3 2,522,240 - CCNA_02378 0.73 +0.0 2,522,240 - CCNA_02378 0.73 -1.3 2,522,240 - CCNA_02378 0.73 +0.5 2,522,240 - CCNA_02378 0.73 -0.6 2,522,240 - CCNA_02378 0.73 -0.4 2,522,245 + CCNA_02378 0.74 -0.0 2,522,263 + CCNA_02378 0.76 +0.6 2,522,265 + CCNA_02378 0.77 +0.2 2,522,273 - CCNA_02378 0.78 -1.3 2,522,307 + CCNA_02378 0.82 +1.2 2,522,328 - CCNA_02378 0.85 +0.0 2,522,343 - CCNA_02378 0.87 -0.4 2,522,398 + +1.8 2,522,470 - +0.8 2,522,484 - +2.8 2,522,491 - +2.3 2,522,502 + -0.1 2,522,600 - CCNA_02379 0.19 +2.7 2,522,606 - CCNA_02379 0.20 +2.8 2,522,615 + CCNA_02379 0.22 -1.4 2,522,623 - CCNA_02379 0.24 +2.2 2,522,629 + CCNA_02379 0.25 -1.6 2,522,661 - CCNA_02379 0.32 +2.4 2,522,678 - CCNA_02379 0.35 +1.8 2,522,792 - CCNA_02379 0.59 +1.5 2,522,845 + CCNA_02379 0.70 -0.7 2,522,845 + CCNA_02379 0.70 -0.2 2,522,845 + CCNA_02379 0.70 -0.9 2,522,853 - CCNA_02379 0.72 +1.6 2,522,853 - CCNA_02379 0.72 +1.9 2,522,853 - CCNA_02379 0.72 +1.7 2,522,853 - CCNA_02379 0.72 +1.2 2,522,853 - CCNA_02379 0.72 +1.7 2,522,853 - CCNA_02379 0.72 +1.7 2,522,853 - CCNA_02379 0.72 +2.3 2,522,868 - CCNA_02379 0.75 +2.0 2,522,878 - CCNA_02379 0.77 +1.3 2,522,881 + CCNA_02379 0.78 -1.0 2,522,884 - CCNA_02379 0.78 +1.9 2,522,903 - CCNA_02379 0.82 +1.4 2,522,978 - +2.5 2,523,155 - CCNA_02380 0.46 +2.5 2,523,551 - -1.1 2,523,629 - CCNA_02381 0.16 -0.0 2,523,739 - CCNA_02381 0.33 -2.3 2,523,772 + CCNA_02381 0.38 +0.0 2,523,772 + CCNA_02381 0.38 -1.1 2,523,847 - CCNA_02381 0.49 +0.7 2,523,852 + CCNA_02381 0.50 +1.9 2,523,858 - CCNA_02381 0.51 +0.3 2,523,892 + CCNA_02381 0.56 -1.4 2,523,907 + CCNA_02381 0.59 +1.6
Or see this region's nucleotide sequence